Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq8 123 3e-23 seq12 84.2 3e-11 >seq8 Length=13546544 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 104867 GAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAATGAAATTGGTGTT 104926 ||||| |||||| | || ||||| | |||||| | || |||| ||||| | |||| Sbjct 1794338 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGTGAAAAGGATGTT 1794397 Query 104927 AAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTTTCGA 104986 | | ||| ||| ||| |||||||| | || |||||||||||||| ||| | || Sbjct 1794398 CATATTTGGGATGCAAATAGTTCACGTGAATTCTTAGATTCTTGTGGTTTTATAGATAGA 1794457 Query 104987 AAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAATAT 105046 ||||||| |||||||| || |||||||||||||||||||||||| ||| || |||| Sbjct 1794458 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATAT 1794517 Query 105047 A 105047 | Sbjct 1794518 A 1794518 >seq12 Length=11902654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 126591 CGTATACCAGAAATTGGAGACAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGG 126649 ||||| ||| ||||||| || |||||| ||| | |||| | ||||||| |||||||| Sbjct 1585348 CGTATTCCACAAATTGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGTGG 1585290 Query 126650 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATATTAT 126709 || ||| |||||| |||||||| ||| | |||| | || || || ||||| Sbjct 1585289 AATTCAATATAGACAAGAGGATATGCCATTTTCGTGTGAAGGTCTTACACCAGACATTAT 1585230 Query 126710 AATTAATCCAAATTGTATACCGTCAAGAATGACCATAAATCAAATAATTG 126759 ||||||||| || ||| || ||| | ||||| || ||| |||||| Sbjct 1585229 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 1585180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658359407957160