Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 185 1e-41 seq15 176 5e-39 >seq6 Length=18472937 Score = 185 bits (204), Expect = 1e-41 Identities = 224/309 (72%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 47231 TTGAATAGATCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcg 47290 ||| ||||| || ||| ||||||||| ||||| | || | |||||| | || Sbjct 6969920 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 6969861 Query 47291 ttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCT 47350 ||||||||| | || | ||||||||| |||| |||||| ||||| ||||| ||||| Sbjct 6969860 TTCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCT 6969801 Query 47351 ACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGC 47410 | | || ||||| || || |||||||||||||||||||||||||| |||||||| || Sbjct 6969800 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 6969741 Query 47411 AGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTAT 47470 ||||||||||| ||||| | ||||| ||| || |||||| ||||||| ||| || Sbjct 6969740 TGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 6969681 Query 47471 CTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATA 47530 | |||||||||| | || | ||||| ||||||||| | |||||| Sbjct 6969680 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCATA 6969621 Query 47531 TTGAAGAAT 47539 ||| | ||| Sbjct 6969620 TTGTAAAAT 6969612 Score = 120 bits (132), Expect = 3e-22 Identities = 117/148 (79%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| ||||| |||||||||||||||||||||| || | |||| |||||||||| Sbjct 6967722 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATA 6967663 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 | |||||||||||||| | || || ||| || | | |||| ||||| | ||||| Sbjct 6967662 TTGCATAATCTGGATGTTTGGTAGT-CATAGTTGCTGCTGTTTCAGCTGCAAGATTATCT 6967604 Query 49035 AATTCTTTAGTAGTTACACCTGTATATA 49062 ||||| |||||||||||||| ||||| Sbjct 6967603 AATTCAACAGTAGTTACACCTGAATATA 6967576 Score = 105 bits (116), Expect = 8e-18 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||||| |||| ||| ||| | ||| |||| ||| | ||| | | || ||| ||||| Sbjct 6969526 TCCTTTGCTTACTGGACTACCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTC 6969467 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 ||| || |||||||| |||| |||||||| |||||||||||||| || || || || Sbjct 6969466 ACAGCTGGCTTCCAAAGCACCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTG 6969407 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 ||||||| |||||| ||||| |||| |||||| | ||||||| Sbjct 6969406 TGCTTCTTCACTTTCAAATGGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAAT 6969347 Query 47720 ACCAATACC 47728 |||||||| Sbjct 6969346 TCCAATACC 6969338 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||||||||| |||||||| ||| | ||| | |||| || ||||||| || Sbjct 6970190 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 6970131 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||||| ||||| ||||||||||| | ||| |||||||| | |||||| | Sbjct 6970130 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 6970071 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAA 47199 |||||||||| ||||| ||||||||||||| Sbjct 6970070 TTTGTGGTATTTCCCAAACTGTTTTATAAA 6970041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||||| || || || |||| |||||| ||||| || |||| |||| | | | Sbjct 6969126 ACAAACATATTAACAGCAATTGAAGCTAAATTACACACAGCAACTTCATCTGGACTGGAA 6969067 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 || || | | ||| | ||||| ||||| || || || || || | |||||||||||| Sbjct 6969066 TACTGCACAACTTCTGTACATAAATTACTACTCTTTATTGTTCCTATATTTTGATGATTT 6969007 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| || || || || ||||||||| | || ||||| ||||| | |||| Sbjct 6969006 GATTTGCG--ATTGCAGTGATCTTTATAAAGCATATATGGAGTTCCTGTTTCAACTTGAG 6968949 Query 48043 ATTCAATGATAGATTTCCA 48061 | || |||| | |||| Sbjct 6968948 AAATAAGAATAGCTGTCCA 6968930 >seq15 Length=10167229 Score = 176 bits (194), Expect = 5e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||| || |||| ||| || || ||| |||||||||||||||| |||||| || Sbjct 2293303 TGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCAT 2293362 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCT 19340 || | ||||| || || ||||| | ||| |||||||| |||||||| || ||||| Sbjct 2293363 GGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCG 2293422 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| || | ||| |||||||| ||||||||| |||||||||||||||||| ||||| Sbjct 2293423 TTCAACAAGATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGA 2293482 Query 19401 AATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 ||||||||||||||| | ||||| ||||||||||| Sbjct 2293483 TATAAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 138 bits (152), Expect = 1e-27 Identities = 165/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 18766 TTTTTGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATC 18825 ||||| | |||||||||| || | |||||| || ||||||| |||||| ||| Sbjct 2292664 TTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACACATA 2292723 Query 18826 ATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCT 18885 | | ||||||||| ||||| | || |||||||| ||||||||| | |||||||||||| Sbjct 2292724 AGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 2292783 Query 18886 ATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGA 18942 || || || || ||| ||||| ||| |||| |||| || || | || | Sbjct 2292784 ATTTTGACAGCATCTTTAATAATTGATGTGACTC---GTTCACAAGATGGTTTTTGTACA 2292840 Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 | ||||| ||||| |||||||||||||||||||||| ||||| Sbjct 2292841 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||| || | ||||| |||||| | || ||||| || ||||| |||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| |||| ||||| ||| |||||| |||||||||||||| ||||||| Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||||| | ||| | || ||||| | || || ||||| || | ||||||| || Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||| |||||||||| | || |||| |||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAATA 2293209 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||||||| | ||| |||||||| |||||||||||||| || || |||||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTatttttattttctttaagaa 19567 ||| |||||| | | || |||||||| | |||||||||| | ||||||||| | | Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAATA 2293724 Query 19568 taggttccattttttgaaaaataataatttcttttcAATA 19607 ||| || | || | || || || ||||||| |||| Sbjct 2293725 AAGGCTCTAATTCTGGATTAAATTTATTTTCTTTCAAATA 2293764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||||||| |||||||||||| | ||| ||||||||||||| || || || || || Sbjct 2292484 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2292543 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 ||| || ||| |||||| |||||||| ||||||| Sbjct 2292544 TAAAGAAATATGTTCCATGAAATCAAACGGATTTT 2292578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562071412738440