Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq15 113 5e-20 >seq15 Length=10167229 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 ||||| || || |||||||||| ||| ||||||||| || |||| |||||| || || Sbjct 2293306 ATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 2293365 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 | ||||||||||| ||||| | || || | || ||| || || | | ||| | | Sbjct 2293366 AACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 2293425 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | | || |||||||| || |||||| ||||||||| || || | |||| ||| Sbjct 2293426 AACAAGATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 2293485 Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCA 37655 ||||||| ||||| | ||| || ||||||||| Sbjct 2293486 AAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 36807 TATTATTTTTCCTTCATTTTTTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTATT 36865 |||||||||| | || |||||| || ||| |||| ||||| || |||| | | Sbjct 2292419 TATTATTTTTGTCTTATAAATTAAAATTCAGCAT-TAACAGTAAAATTGCTTTCAATTCT 2292477 Query 36866 ACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTT 36925 | | ||| |||||| ||||||||||||||| ||| | |||| || || |||||||| Sbjct 2292478 ATCTTGCATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTT 2292537 Query 36926 TCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||||| || |||| |||||| |||||||| ||||| Sbjct 2292538 ACCTTCTAAAGAAATATGTTCCATGAAATCAAACGGATT 2292576 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||| || | ||||| ||| || | ||||||||| | |||||| ||||| Sbjct 2292990 TCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTTTT 2293049 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || || |||||| ||| ||||||||||||||| ||||| ||||| || Sbjct 2293050 AACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 2293109 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 || | |||| | ||||| | ||| | || | ||||| ||| | ||||| || Sbjct 2293110 ACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAGCT 2293169 Query 37380 TTTAATTTAACACAT-TCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 ||| | ||||||| ||| | ||||||| || || || | |||| Sbjct 2293170 TTTTTTGCAACACATGGCAAAT-TTTCAATAGCATTAAATAAGAAGT 2293215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 ||||| ||||||||||| || |||| |||||| |||| | | || || || || | || Sbjct 2292691 CTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCATTTCA 2292750 Query 37068 ACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTA 37127 || || | ||||||| | |||| || ||| ||| | ||||||||||||| || ||| Sbjct 2292751 ACAGGTAATGCATCTGTCAAAAATTCTTGTTCAATTTTGACAGCATCTTTAA-TA-ATTG 2292808 Query 37128 ACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTTAAACAATAAACATGCAAAA 37184 | | ||| |||| | || | || || | | ||| |||| ||||||||||||| Sbjct 2292809 A-TGTGACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGCAAAA 2292867 Query 37185 TCACAATGTAAACC 37198 ||||||||||| || Sbjct 2292868 TCACAATGTAATCC 2292881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592277403528840