Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3431 372 5e-98 >seq3431 Length=1311 Score = 372 bits (412), Expect = 5e-98 Identities = 477/653 (73%), Gaps = 11/653 (2%) Strand=Plus/Plus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||| ||||||| ||||||||| | ||| |||||||||||||| || ||||||| Sbjct 663 CCCTTCACGCACACCACCTGCTTCAACGTGTGGACGATCTCCACCAGATCGGCCTGGGCA 722 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 ||||| ||| |||||||||||| || ||| | ||||||||||||||||||||||||||| Sbjct 723 GCCATCACGGCTTCGATCGGCTTATAGGCCCTGGGCGTCTCGTCGATCACGCCTTCGTCC 782 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTTC 168452 |||||||| |||||||| |||| | ||| |||||||| || | || |||||||| Sbjct 783 TTGCGGCAGGCGACGCCCGCCGTGTCGGCGATATGCTCGTCGAGCGTCACCAGCTTCTTG 842 Query 168453 GCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCAGCG 168512 ||||| | || ||||| ||||| || |||||||||||||| | ||| | ||| | | Sbjct 843 GCCGCGGTGCGGGACATCACGCGCCCCGCGCCGTGGCTGCAGCTGTCGAACGAGTCCGGG 902 Query 168513 TGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGT 168572 | ||| ||||||||||||||||||||||||||||| |||||||| ||||| || || Sbjct 903 TTGCCGAGCCCGCGCACGATGAACGACTTGGCGCCCATGGAACCCGGGATGATCCCCAGC 962 Query 168573 TCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGG 168632 || |||| ||| |||||| ||||||||||| || | | | ||||||||| ||| Sbjct 963 ACGCCCTTGGCCGCGCGCACCGCCCCCTTGCGGGTGACCAGCACATTCTCGCCGAAATGG 1022 Query 168633 CGTTCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGAACGCC 168692 || | || ||||||||||| |||||||| || ||| || | | ||||| | Sbjct 1023 TTCTCGCGCGTCACATAGTTGTGGTGGCAGTTCACTGCCTCCAGTTCCGCGTCGAACGGC 1082 Query 168693 GGCACGAACT---CCCGGATCGCCTTGAGCACGCGGACCATCATCATGTCGCGGTTCAG- 168748 ||| || | || | || || ||| | ||||||||| ||||| || Sbjct 1083 TTGGCGATCTGCCCGCGCAGGGCGGCGATGACGTTGGTCATCATCATCCGCCGGTTGAGC 1142 Query 168749 GCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCGCC 168808 ||| || |||| ||||||||||| || || |||| || ||||||||| || ||| Sbjct 1143 GCG-GCATAGTCCTGCGCCCAGCCGACCGCCTCGACATAATCGTCGAAA---TGGTCGGT 1198 Query 168809 CACTTC---GAGCCACGCGAGGTTCTCGTCCTGCGGGCGCACATGGCGCTTTGCCAGGGC 168865 | |||| || | ||||||| || || || || | || | ||| || | | Sbjct 1199 CCCTTCCGGGAAATAGGCGAGGTCCTGATCGGGCAGGTTGATGTGCCACTTGCGCATGTC 1258 Query 168866 GTTCTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCG 168918 | ||||||| ||||||||| || ||||||| |||||||||||||||||| Sbjct 1259 CTGCTTCGCCAGTTCGATGAAGAAGGTGCCGATGGCGTTGCCGACGCCGCGCG 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895706820337320