Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq3431 260 2e-64 >seq3431 Length=1311 Score = 260 bits (288), Expect = 2e-64 Identities = 454/656 (69%), Gaps = 11/656 (2%) Strand=Plus/Plus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||||||||| | || ||||| | ||||||||||| ||||| || || |||||| Sbjct 663 CCCTTCACGCACACCACCTGCTTCAACGTGTGGACGATCTCCACCAGATCGGCCTGGGCA 722 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 |||| || || ||||| ||| |||||| | || | |||||||||||||| ||||| Sbjct 723 GCCATCACGGCTTCGATCGGCTTATAGGCCCTGGGCGTCTCGTCGATCACGCCTTCGTCC 782 Query 135528 TTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG 135587 || ||||| | |||||| | ||| | ||| || || || || || | | |||| Sbjct 783 TTGCGGCAGGCGACGCCCGCCGTGTCGGCGATATGCTCGTCGAGCGTCACCAGCTTCTTG 842 Query 135588 GCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCA 135647 ||| ||| || |||||| || ||||||||||| ||| | ||||||||||| Sbjct 843 GCCGCGGTGCGGGACATCACGCGCCCCGCGCCGTGGCTGCAGCTGTCGAACGAGTCCGGG 902 Query 135648 TTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAAC 135707 ||||| |||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 903 TTGCCGAGCCCGCGCACGATGAACGACTTGGCGCCCATGGAACCCGGGATGATCCCCAGC 962 Query 135708 TGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 135767 | |||| ||| |||||| ||||||||||| || | || |||| |||| ||| Sbjct 963 ACGCCCTTGGCCGCGCGCACCGCCCCCTTGCGGGTGACCAGCACATTCTCGCCGAAATGG 1022 Query 135768 AATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC 135827 || | || |||||||||||||||||||| || ||| |||| | ||||||| Sbjct 1023 TTCTCGCGCGTCACATAGTTGTGGTGGCAGTTCACTGCCTCCAGTTCCGCGTCGAACGGC 1082 Query 135828 --GGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGA 135885 ||| | | | | |||| ||| | | ||| | |||||||||| ||||||| Sbjct 1083 TTGGC--GATCTGCCCGCGCAGGGCGGCGATGACGTTGGTCATCATCATCCGCCGGTTGA 1140 Query 135886 TCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACT--CCGGTTC 135943 | || ||||||| ||||| |||| || || || || |||| ||| | |||| Sbjct 1141 GCGCGGCATAGTCCTGCGCCCAGCCGACCGCCTCGACATAATCGTCGAAATGGTCGGT-- 1198 Query 135944 GCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCAGCAT 136003 ||||| || | || ||||||| || || | ||| || | | |||| Sbjct 1199 CCCTTCCGGGAAATAGGCGAGGTCCTGATCGGGCAGGTTG---ATGTGCCACTTGCGCAT 1255 Query 136004 CATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCG 136059 || ||| ||| |||||||||| |||||||| ||||||||||||||||| Sbjct 1256 GTCCTGCTTCGCCAGTTCGATGAAGAAGGTGCCGATGGCGTTGCCGACGCCGCGCG 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700398211665240