Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq3431 199 6e-46 >seq3431 Length=1311 Score = 199 bits (220), Expect = 6e-46 Identities = 375/538 (70%), Gaps = 19/538 (4%) Strand=Plus/Plus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC--CTTG 139562 |||||| ||||||| | || | ||| || || || ||||| | | || |||| Sbjct 785 GCGGCAGGCGACGCCCGCCGTGTCGGCGATATGCTCGTCGAGCGTCAC--CAGCTTCTTG 842 Query 139563 GCGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGCG 139622 || |||||||| ||||| |||||||||||||| ||| | ||||||||| | | Sbjct 843 GCCGCGGTGCGGGACATCACGCGCCCCGCGCCGTGGCTGCAGCTGTCGAACGAGTCCGGG 902 Query 139623 TTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAAC 139682 ||||| |||||||||||| | |||||||| ||||| || || |||||||| || | | Sbjct 903 TTGCCGAGCCCGCGCACGATGAACGACTTGGCGCCCATGGAACCCGGGATGATCCCCAGC 962 Query 139683 TGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 139742 | |||| || |||||| ||||||||||| || | || |||| |||| ||| Sbjct 963 ACGCCCTTGGCCGCGCGCACCGCCCCCTTGCGGGTGACCAGCACATTCTCGCCGAAATGG 1022 Query 139743 AACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGC 139802 ||| | || |||||||||||||||||||| || ||| |||| | ||| ||| Sbjct 1023 TTCTCGCGCGTCACATAGTTGTGGTGGCAGTTCACTGCCTCCAGTTCCGCGTCGAACGGC 1082 Query 139803 --GGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGA 139860 ||| | | |||||| |||| | | ||| | ||||||||||| ||||||| Sbjct 1083 TTGGC--GATCTGCCCGCGCAGGGCGGCGATGACGTTGGTCATCATCATCCGCCGGTTGA 1140 Query 139861 TCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATT--CCGGCTC 139918 | || ||||||| ||||| |||| || || || || |||| ||| | ||| || Sbjct 1141 GCGCGGCATAGTCCTGCGCCCAGCCGACCGCCTCGACATAATCGTCGAAATGGTCGG-TC 1199 Query 139919 GCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGAC--GCAGC 139976 ||||||| | | |||||||||| ||| || | | ||| || || || || || Sbjct 1200 -CCTTCCGGGAAATAGGCGAGGTCCTGATCGGGCAGGT--TGA-TGTGCC-ACTTGC-GC 1253 Query 139977 ATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCG 140034 || || ||| ||| |||||||||| |||||||| ||||||||||||||||| Sbjct 1254 ATGTCCTGCTTCGCCAGTTCGATGAAGAAGGTGCCGATGGCGTTGCCGACGCCGCGCG 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715728391948800