Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq3431 224 1e-53 >seq3431 Length=1311 Score = 224 bits (248), Expect = 1e-53 Identities = 445/656 (68%), Gaps = 11/656 (2%) Strand=Plus/Plus Query 137207 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 137266 ||||||||||| | || ||||| | ||||||||||| ||||| || || |||||| Sbjct 663 CCCTTCACGCACACCACCTGCTTCAACGTGTGGACGATCTCCACCAGATCGGCCTGGGCA 722 Query 137267 TCCATGACCGCGTCGNNNNNNNNNNNNNNNNNNNNNATTTCGTCGATCACGCCGGCGTCC 137326 |||| || || ||| | |||||||||||||| ||||| Sbjct 723 GCCATCACGGCTTCGATCGGCTTATAGGCCCTGGGCGTCTCGTCGATCACGCCTTCGTCC 782 Query 137327 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGAGTGAAGGTCGCCTTG 137386 |||||||| | |||||| | ||| | ||| || || || || || | | |||| Sbjct 783 TTGCGGCAGGCGACGCCCGCCGTGTCGGCGATATGCTCGTCGAGCGTCACCAGCTTCTTG 842 Query 137387 GCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCA 137446 ||| ||| || |||||| || ||||||||||| ||| | ||||||||||| Sbjct 843 GCCGCGGTGCGGGACATCACGCGCCCCGCGCCGTGGCTGCAGCTGTCGAACGAGTCCGGG 902 Query 137447 TTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAAC 137506 ||||| |||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 903 TTGCCGAGCCCGCGCACGATGAACGACTTGGCGCCCATGGAACCCGGGATGATCCCCAGC 962 Query 137507 TGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 137566 | |||| ||| |||||| ||||||||||| || | || |||| |||| ||| Sbjct 963 ACGCCCTTGGCCGCGCGCACCGCCCCCTTGCGGGTGACCAGCACATTCTCGCCGAAATGG 1022 Query 137567 AATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC 137626 || | || |||||||||||||||||||| || ||| |||| | ||||||| Sbjct 1023 TTCTCGCGCGTCACATAGTTGTGGTGGCAGTTCACTGCCTCCAGTTCCGCGTCGAACGGC 1082 Query 137627 --GGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGA 137684 ||| | | | | |||| ||| | | ||| | |||||||||| ||||||| Sbjct 1083 TTGGC--GATCTGCCCGCGCAGGGCGGCGATGACGTTGGTCATCATCATCCGCCGGTTGA 1140 Query 137685 TCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACT--CCGGCTC 137742 | || ||||||| ||||| |||| || || || || |||| ||| | ||| || Sbjct 1141 GCGCGGCATAGTCCTGCGCCCAGCCGACCGCCTCGACATAATCGTCGAAATGGTCGG-TC 1199 Query 137743 GCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCAT 137802 ||||| || | || ||||||| || || | ||| | ||| || |||| Sbjct 1200 -CCTTCCGGGAAATAGGCGAGGTCCTGATCGGGCAGGTTG-ATGTGCCAC-TTGC-GCAT 1255 Query 137803 CATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCG 137858 || ||| ||| |||||||||| | |||||||| ||||||||||||||||| Sbjct 1256 GTCCTGCTTCGCCAGTTCGATGAAGAAGGTGCCGATGGCGTTGCCGACGCCGCGCG 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709674394642080