Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq3479 129 8e-25 >seq3479 Length=4283 Score = 129 bits (142), Expect = 8e-25 Identities = 414/636 (65%), Gaps = 31/636 (5%) Strand=Plus/Minus Query 139437 GAAAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGACTATCAGTG 139496 |||| || ||||| | || || || || || ||| | | |||| | ||| | | | Sbjct 2253 GAAAGGGTATTATACTGGCTGGCGGATCCGGAACCAGACTTTATCCTATTACTTTAGGCG 2194 Query 139497 TTTCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACAACTC 139556 | || |||||||||||||| | || |||||||| |||||||||||||| | | | Sbjct 2193 TATCAAAACAGTTATTACCCATTTATGATAAACCGATGATTTACTATCCCCTTTCTGTAC 2134 Query 139557 TTATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGATAGAAATTCTT 139616 |||| || || ||| ||||| | || || ||||| || ||| | | || Sbjct 2133 TTATGCTGGCCGGGATACGAGAAATCATGATTATTTCAACTCCTGCAGATTTACCTAATT 2074 Query 139617 TCGAGAACTTACTAGGTAACGGTTCACA-ATTTGGTGTTAGAATAGAATACGCTGTTCAA 139675 | | || | ||||| |||| || | |||| | |||| || | || | || Sbjct 2073 TTAAAAAAATGTTAGGTGACGG--CAGAGATTTAG-----GAATTGATTTATCTTATAAA 2021 Query 139676 GAAAAACC------TAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGGT 139729 | | |||| | | || || |||||||||||| || |||| | |||||| || || Sbjct 2020 GTACAACCATCTCCTGACGGATTGGCACAAGCTTTCATTCTCGGAGCAGAATTTATTGGC 1961 Query 139730 AAATCTAAAGTAGCTCTGATTTTAGGTGACAACATTTTCCATGCTTCTAATATAGATAGA 139789 ||| ||| || | || ||| | ||||| |||||||| | | | | | | | | Sbjct 1960 AAAGATAATGTCACACTTATTCTGGGTGATAACATTTTTTACGGGCAAAGTTTCGGTGCA 1901 Query 139790 ---TTACTTATGGAAGCT-AATATGTCTGATAAAAA-----TACGATATTTGCATATCGT 139840 |||| | || ||| || | | ||||| ||| |||| | ||| | Sbjct 1900 CAATTACAAAAGGCAGCACAACAAG------AAAAAGGTGCTACCGTATTCGGTTATTAT 1847 Query 139841 GTAAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATGATAACGCTGTTTCG 139900 || ||||| ||| || ||| |||||||| ||||| || | ||| || || |||| Sbjct 1846 GTTAATGACCCTGAGCGATTCGGTGTAGTCGAATTTGACACAAATGGAAAAGCACTTTCC 1787 Query 139901 ATCGAAGAAAAACC-TTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATATTTCTA 139959 || ||||||||||| |||| | ||||| ||||| || | |||| || ||||| || Sbjct 1786 ATAGAAGAAAAACCGAATGAA-GCAAAATCAAATTATGCGATTACAGGATTGTATTTTTA 1728 Query 139960 TAATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGAATACGA 140019 | |||| || ||||| || |||| |||| ||| |||||| | | || ||| ||| Sbjct 1727 TGATAATGACGTTATTGAGATAGCCAAGAGTATTCGTCCTTCACCCAGAGGTGAACTCGA 1668 Query 140020 AATATCAGATATTAACGCATATTACTTAGATAAGAA 140055 |||| | ||||||||| ||| ||| ||||||| Sbjct 1667 AATAACCGATATTAACAATGCTTATTTAAATAAGAA 1632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701815717377120