Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq3479 138 1e-27 >seq3479 Length=4283 Score = 138 bits (152), Expect = 1e-27 Identities = 314/464 (68%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 38545 TAATTTGAGTAGGTATTGCCCGTACTCTGTTTTCTTCAGTGAGTTT-CCATGATACACCA 38603 || ||| | ||| ||||| || || |||||||| || | ||||| || | | | || Sbjct 1400 TAGTTTTAATAGATATTGACCATAATCTGTTTT-TTGAAAAAGTTTACCGCGTTTAAACA 1458 Query 38604 AAGTCTCTAAAGAAATCCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCA 38663 | |||||| ||||| | || || |||||||||||||| | ||| || || || | Sbjct 1459 ATTGATCTAAATCTATCCAGCTATTATTAAAAGCAATTTCTTCAAGGCATGCTATTTTTA 1518 Query 38664 ATCCTTGACAGTTCTCAATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTG 38723 | || || | || ||||||||||| || || | ||||| ||||| | |||| Sbjct 1519 AACCCTGTCTTTTTTCAATAGTCTGAACAAAGCAGCTGGCTTCAATCAGTGAATCATGTG 1578 Query 38724 TTCCTGTGTCAAGCCAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAAC--TTCCTGTC 38781 | || || || ||||| | ||| || || ||||| | ||| || | ||| || || | Sbjct 1579 TACCAGTATCCAGCCATGCAAAGCCACGCCCGAGTATTTCAACATTTAATAATTTCT-TA 1637 Query 38782 TTCTAGGTAGCTGCGATTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGG--GGTT 38839 || | ||| | || ||||| || || || ||||| || | | ||||| | | Sbjct 1638 TTTAAATAAGCATTG-TTAATATCGGTTATTTCGAGTTCACCTCTGGGTGAAGGACGAAT 1696 Query 38840 ACTTCTAATGCACGTTGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAA 38899 ||| | || | |||||| |||||||| |||||||| ||||| | |||||| Sbjct 1697 ACTCTTG--GCTATCTCAATAACGTCATTATCATAAAAATACAATCCTGTAATCGCATAA 1754 Query 38900 TCTGATTTAGGATTTTCAGGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAAT 38959 | |||||| | | | ||||| ||||| || |||| |||| | ||| | ||||| Sbjct 1755 TTTGATTTTGCTTCATTCGGTTTTTCTTCTATGGAAAGTGCTTTTCCATTTGTGTCAAAT 1814 Query 38960 TCAACCACACCGAATCGTTCAGGATCTTTCACCAAATACCCGAA 39003 || || ||||||||||| ||||| || || || |||| ||||| Sbjct 1815 TCGACTACACCGAATCGCTCAGGGTCATTAACATAATAACCGAA 1858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472598964170520