Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq8 120 4e-22 >seq8 Length=13546544 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305 |||| ||| | || ||| || | ||||||||| | ||||| | | |||||||||||| Sbjct 7888230 TTGCAATATTTTTTATTCCTTCAGGTCCATGATATACAGCATACATTGCAGACATATTTG 7888171 Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365 | || | ||||||||| || || || || || || ||||||||||||||||||||||| | Sbjct 7888170 CCAGTAATGCTTGTGCGGTACAAATATTGCTAGTAGCTTTGTCTCTTCTAATATGCTGTT 7888111 Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCA 139394 ||| ||||| || ||||| | |||||| Sbjct 7888110 CTCGTGTTTGAAGAGCTAAGCGATATGCA 7888082 Score = 102 bits (112), Expect = 9e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | ||||| |||||||| || || || ||||| ||||| ||||| Sbjct 7889467 ACTCCAATAGGTCCCATTCCAGGTCCTCCACCGCCGTGAGGTATACAAAATGTTTTATGC 7889408 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || ||||| | || || ||| || |||| ||| || || || || ||| Sbjct 7889407 AAGTTAAGATGTGAAACGTCACTACCGTAATCACCTGGACGACATAATCCAACTTGAGCA 7889348 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| || ||||||||| | ||||| || |||| || Sbjct 7889347 TTCATGTTAGCTCCATCTAAATACACTTGACCACCAGCTTTATGAATCATAGTACAAATA 7889288 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | ||| | |||||| || |||| || ||||||||||| ||||| | ||| || Sbjct 7889287 TCGGCGATAGTCTCTTCAAACACTCCATTTGTTGATGGATATGTTATCATTAAACAAGA 7889229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 ||||||||||||||||| |||||||||| ||||||||||| |||||| | ||| || Sbjct 7887558 GCCTCTGCTGCTGCAGTGCCTTCATCTAAAAGAGATGCGTTCGCTATTTCCATTCCAGTT 7887499 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 | || || | ||||||||||| |||| | |||| | ||| || || || || || Sbjct 7887498 AAGTCACATATCATTGTTTGGTAATTCAATAGACCTTCAAGTCTGCCTTGTGAAATTTCT 7887439 Query 139983 GCTTGATAGGGAGTGTA 139999 | |||||| || || || Sbjct 7887438 GGTTGATATGGTGTATA 7887422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578959889368920