Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 114 4e-20 seq110 107 6e-18 seq142 104 7e-17 seq12 95.1 4e-14 seq15 93.3 1e-13 seq10 87.8 5e-12 >seq1 Length=29893408 Score = 114 bits (126), Expect = 4e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| | ||||| ||||| ||||| ||||| || | | ||| |||| || || | Sbjct 13893954 CTTTTTCTTCCAACGGCATCGATTTCATCAATAAATAATATACATGGAGCATGTTTCCGT 13894013 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | |||||| | |||| || | |||| |||| ||||||| ||||||| | |||| Sbjct 13894014 GCCAATGCAAACATATCTCGAACTCTTGATGGACCAACACCAACAAACATTTCCAAAAAT 13894073 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || || | ||||| ||| || | |||||||||||| || ||| ||| | || | Sbjct 13894074 TCTGAGCCTGATACACTAATAAAAGGTACATTTGCTTCACCAGCTGTAGCCTTAGCTAAT 13894133 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| ||||| ||||||||||| || Sbjct 13894134 AATGTTTTACCAGTTCCAGGTGGACC 13894159 >seq110 Length=147519 Score = 107 bits (118), Expect = 6e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| | ||| | ||||||| || ||||||||||| Sbjct 57689 ATTTCTAACTGTTCCATCATAATGCACCATTACAGATTCCATAGCTTTTATTAAACGACG 57748 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 57749 TTGAATATAACCAGTTTCTGCAGTTTTTACAGCAGTATCAATAAGACCTTCACGACCACC 57808 Query 302658 CATAGCATGGAA 302669 ||||||||| || Sbjct 57809 CATAGCATGAAA 57820 >seq142 Length=81333 Score = 104 bits (114), Expect = 7e-17 Identities = 146/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 289129 ATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACT 289188 |||||| ||||||| | | | | | |||| |||| |||| ||||| || |||||| Sbjct 25236 ATTTCTTCAAATTCTGGTCCAGCTGCATGAAAAAATGGTACACCAGCTTCACCAGCTACT 25177 Query 289189 GCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 || || || | | |||||| |||||||| |||||||| |||||| || || || ||| Sbjct 25176 GCTCTAGCTAACAATGTCTTTCCTGTTCCTGGTGGTCCTACTAATAATACACCTTTAGGT 25117 Query 289249 ACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC- 289304 | |||||| ||| ||||| | |||| || || | ||||||||||| ||||| || Sbjct 25116 AGTTTTGCACCAAGTGCAGA---AAATTTTTCTGGATTTTTTAAAAATTCGACAATATCA 25060 Query 289305 CTCAAGTTCATATTTTGCCTC 289325 || || ||| | ||| || || Sbjct 25059 CTTAA-TTCTTGTTTAGCTTC 25040 >seq12 Length=11902654 Score = 95.1 bits (104), Expect = 4e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| ||||||||||| ||||| || || ||||| ||| | || || ||| Sbjct 1585194 ATAGTCATACGTGATGGAATAGCATGAGGATTAATTATAATGTCTGGTGTAAGACCTTCA 1585253 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 | || |||||||||| || || ||| || ||||| ||| || |||||||| || Sbjct 1585254 CACGAAAATGGCATATCCTCTT-GTCTATATTGAATTCCACAAGTACCTTTTTGTCCATG 1585312 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| ||| || ||||||||||| ||| ||||| || || | | | ||||| Sbjct 1585313 ACGTGAAGCAAATTTATCACCAATTTGTGGAATACGAACGCTGCGTACTCTTATTTTACA 1585372 Query 252024 GAAGTTGTAACCATCACCGTT 252044 || || || || |||| ||| Sbjct 1585373 AAATTTATATCCTTCACTGTT 1585393 >seq15 Length=10167229 Score = 93.3 bits (102), Expect = 1e-13 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 133416 TATTCAACGCCATTAGCGAATTT-CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAA 133474 |||| || || ||| | ||||| || ||| || ||| ||| || | ||||| | || Sbjct 2293209 TATTTAATGCTATT-GAAAATTTGCCATGTGTTGCAAAAAAAGCTCATTGGGCGTTAAAT 2293151 Query 133475 TGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAG 133534 ||||| | | | |||| | |||| || ||| | ||||||||||||| |||||| Sbjct 2293150 TGGATAAATCATGAAAGTGCTACTTTTCCTGAACGTGTAGTTGCTTTTGCTGCAGTAGAA 2293091 Query 133535 GGCAtttttttCAGTGGTGCGTTCTG-CTCTATTTTTTGGCTTAAAAAGCGTGGTATTCT 133593 || ||||| || |||||| ||| || | ||||||| ||| | |||||| | ||| || | Sbjct 2293090 GGTATTTTCTTTAGTGGT-AGTTTTGCCGCTATTTTCTGGTTAAAAAAGAGAGGTCTTAT 2293032 Query 133594 ACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 || ||||| ||| || || |||||||| || || |||| Sbjct 2293031 GCCAGGACTTACATTTAGCAATGAGCTTATTTCTAGAGATGAGG 2292988 Score = 87.8 bits (96), Expect = 5e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 133204 TGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262 ||||||||||||||| ||| ||| | ||||| |||||||| || |||||| |||||| Sbjct 2293498 TGAAAAACATTTTATATCTCATG-TCTTAGCATTTTTTGCAGCTTCTGATGGAATTGTTA 2293440 Query 133263 TTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTT 133322 ||| ||| | | ||| |||| |||||| ||| | | || || ||| || | Sbjct 2293439 ATGAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTCT 2293380 Query 133323 ATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATA 133382 |||| | || |||| ||||||||| | ||||| | |||||| ||||||||| Sbjct 2293379 ATGGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTATTCTTTGTTAATTGATA 2293320 Query 133383 CTTACAT 133389 | ||||| Sbjct 2293319 CATACAT 2293313 >seq10 Length=12965953 Score = 87.8 bits (96), Expect = 5e-12 Identities = 118/164 (72%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| | |||| | ||||| |||||||||||||| | | | |||||| || | Sbjct 10104535 TAGCACCATATCCAATTAAGCAATCTCGTTCCATTTCACCTAATCTTAAACCACCTTCCT 10104476 Query 233331 ----TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGA 233386 | ||||| || | || |||||| ||||| |||| |||||| || |||||||| Sbjct 10104475 TAGCTCGACCTCCCGT----TGGTTGACGCGTTAATACAGCTCTTGGTCCTCGAGCACGA 10104420 Query 233387 TAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 || |||||||||| |||||||| |||| | | |||||| Sbjct 10104419 GCATGCATTTTATCTTGTACCATATGTTTCAATTTTTGATAATA 10104376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471717258375177