Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq8 140 4e-28 seq3 102 1e-16 >seq8 Length=13546544 Score = 140 bits (154), Expect = 4e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 172401 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 172460 ||| | |||||| |||||||||| || || || |||| |||||| ||| | | |||| Sbjct 1794338 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGTGAAAAGGATGTT 1794397 Query 172461 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 172520 | ||||| ||| ||| |||| |||||||| ||||||| || || |||| || ||| Sbjct 1794398 CATATTTGGGATGCAAATAGTTCACGTGAATTCTTAGATTCTTGTGGTTTTATAGATAGA 1794457 Query 172521 AAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACAT 172565 ||||||| |||||||| || |||||||||||||||||||||||| Sbjct 1794458 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 1794502 >seq3 Length=13234341 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 165953 AAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAA 166012 || ||||| ||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 13168062 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 13168121 Query 166013 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 13168122 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 13168180 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || Sbjct 13168181 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 13168240 Query 166132 ATCAAGATATATTTATACCA 166151 | ||||||||| ||||| Sbjct 13168241 TCCTCGATATATTTTTACCA 13168260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632447531535480