Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq6 104 2e-17 >seq1 Length=29893408 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | || || ||||| || || | ||| || || Sbjct 27602777 ATGCAAATTTTTGTTAAAACTCTTACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTCA 27602718 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | |||||| |||||| ||||||||||| | || |||||| Sbjct 27602717 GATACAATAGAGAACGTAAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 27602658 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| || |||||||| || |||| |||||| | | |||||||| Sbjct 27602657 CAACGTTTGATTTTTGCTGGAAAACAGCTTGAAGATGGAAGAACACTCTCAGATTACAAT 27602598 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||||| | || |||| |||||||| ||||| |||| Sbjct 27602597 ATTCAGAAAGAATCTACTCTTCATCTGGTATTAAGACTTCGAGGAGGAA 27602549 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| | || || |||||||||||| | ||| || || Sbjct 27604749 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGCTTCA 27604690 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| |||||| ||||||||||| | || |||||| Sbjct 27604689 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 27604630 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| |||||||| | || |||| ||||| | | ||||| ||| Sbjct 27604629 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCAGATTATAAC 27604570 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| |||||||| || | ||| | ||||| ||||| |||||||||| Sbjct 27604569 ATTCAGAAAGAATCCACACTTCACTTAGTGTTGAGACTTCGAGGGGGAA 27604521 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| |||| || ||||| || || | ||| || || Sbjct 27601866 AATGCAAATTTTTGTCAAAACTCTAACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTC 27601807 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | |||||| |||||| ||||||||||| | || ||||| Sbjct 27601806 AGATACAATAGAAAACGTAAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 27601747 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | || | ||| || |||||||| || |||| |||||| | | |||||||| Sbjct 27601746 GCAACGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACACTCTCAGATTACAA 27601687 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||||| | || |||| || ||||| || || |||| Sbjct 27601686 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGTGGAGGAA 27601637 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| |||| || ||||| || || | ||| || || Sbjct 27602550 AATGCAAATTTTTGTCAAAACTCTAACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTC 27602491 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | ||||| |||||| ||||||||||| | || ||||| Sbjct 27602490 AGATACAATAGAAAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 27602431 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | | || | ||| |||||||| | || |||| |||||| | | |||||||| Sbjct 27602430 ACAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACACTCTCAGATTACAA 27602371 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||||| | || |||| || ||||| |||||||||| Sbjct 27602370 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGGGGAA 27602321 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| |||||| | || || ||||| ||||| | ||| || || Sbjct 27601638 AATGCAAATCTTTGTTAAAACTCTTACTGGAAAAACTATTACACTTGAAGTTGAAGCTTC 27601579 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | ||||| |||||| || |||||||| | || ||||| Sbjct 27601578 GGATACCATAGAAAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 27601519 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | |||| ||| || ||||| || || |||| |||||| | |||||||| Sbjct 27601518 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGATTACAA 27601459 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| ||||||||||| |||||| |||| || ||||| ||||| ||| Sbjct 27601458 TATTCAGAAAGAATCTACATTGCACTTGGTATTGAGACTTCGAGGAGGA 27601410 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| |||| || ||||| || || | || || || Sbjct 27602322 AATGCAAATCTTTGTCAAAACTCTAACTGGAAAAACTATCACTCTTGAGGTTGAAGCTTC 27602263 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | ||||| |||||| ||||||||||| | || ||||| Sbjct 27602262 GGATACAATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 27602203 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | | |||| ||| || ||||| || || |||| |||||| | | |||||||| Sbjct 27602202 ACAACGTTTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAA 27602143 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||||| | || |||| || ||||| ||||| |||| Sbjct 27602142 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGAA 27602093 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||||||| | || || ||||| || || | ||| || || Sbjct 27602094 AATGCAGATTTTTGTCAAAACTCTTACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTC 27602035 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | ||||| |||||| ||||||||||| | || ||||| Sbjct 27602034 GGATACAATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 27601975 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | | || | ||| |||||||| | || |||| |||||| | | |||||||| Sbjct 27601974 ACAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACACTCTCAGATTACAA 27601915 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||||| | || |||| |||||||| ||||| |||| Sbjct 27601914 TATTCAGAAAGAATCTACTCTTCATCTGGTATTAAGACTTCGAGGAGGAA 27601865 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| | || ||||| || |||||| | ||| || || Sbjct 27605205 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTTGAAGCTTCA 27605146 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| || |||||||| | || ||||| Sbjct 27605145 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 27605086 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| || |||||||| || |||| |||||| | | ||||| || Sbjct 27605085 CAACGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCAGATTATAAT 27605026 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||||| | || |||| || ||||| ||||| |||| Sbjct 27605025 ATTCAGAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGAGGAA 27604977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || ||||| || || | ||| || || Sbjct 27604978 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 27604919 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | ||||| |||||| ||||||||||| | ||| ||||| Sbjct 27604918 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGATCA 27604859 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| |||||||| || || |||| ||||| | | ||||| || Sbjct 27604858 GCAACGCTTGATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTCTCAGATTATAA 27604799 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| |||||||| | || | ||||| ||||| |||| || Sbjct 27604798 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 27604751 >seq6 Length=18472937 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||||||||| | || || ||||| ||||| | ||| || || Sbjct 4824737 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4824796 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| || ||| || |||||||| | || ||||| Sbjct 4824797 AGATACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 4824856 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||| | || | ||| |||||||||||||| |||| | || | | |||||||| Sbjct 4824857 ACAGAGATTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTACAA 4824916 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| | || | || || |||| || || |||| Sbjct 4824917 TATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGGAA 4824966 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || ||||||||| | || || || || ||||| | ||| || || Sbjct 4826333 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAAGCTTC 4826392 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| || ||| ||||||||||| | ||| ||||| Sbjct 4826393 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCCCCTGATCA 4826452 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||| | || | ||| |||||||| |||||||||| | || | | |||||||| Sbjct 4826453 ACAGAGATTAATCTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGATTACAA 4826512 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||||| ||||| Sbjct 4826513 TATTCAAAAAGAGTCTAC 4826530 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||| | || || ||||| ||||| | ||| || || Sbjct 4826562 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCT 4826621 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || ||| ||||||||||| | || |||||| Sbjct 4826622 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 4826681 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| |||||||||||||| |||| | ||| | | ||||| || Sbjct 4826682 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCCGATTATAAT 4826741 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 4826742 ATTCAAAAAGAATCGAC 4826758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||||||||| | || || ||||| ||||| | ||| || || Sbjct 4824965 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4825024 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| || ||| || |||||||| | || ||||| Sbjct 4825025 AGATACTATTGAAAATGTTAAAGCCAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 4825084 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||| | || | ||| |||||||| ||||| |||| | || | | |||||||| Sbjct 4825085 ACAGAGATTAATCTTTGCCGGTAAACAACTGGAAGATGGTCGTACTCTTTCCGATTACAA 4825144 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||||||||||| Sbjct 4825145 TATTCAAAAAGAATCTAC 4825162 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || ||| | ||||| |||||||| || | || || | | Sbjct 4825878 ATGCAAATTTTCGTTAAGACTCTTACCGGAAAAACCATCACTTTGGAGGTTGAAGCATCC 4825937 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || ||| || || || || | || ||||| Sbjct 4825938 GATACTATCGAAAATGTTAAAACTAAAATTCAAGATAAGGAGGGTATTCCTCCAGATCAG 4825997 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| |||||||||||||| |||| | ||| | ||||||| || Sbjct 4825998 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAAT 4826057 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| || || || | || || | || |||| |||| Sbjct 4826058 ATTCAAAAAGAATCAACATTACATTTAGTATTGCGTTTGAGAGGTGGAA 4826106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| | || || || || ||||| | ||| || || Sbjct 4825650 ATGCAAATTTTCGTCAAAACCCTTACAGGAAAGACTATTACTCTTGAAGTAGAAGCTTCT 4825709 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | |||||| |||||| ||||||||||| | || || ||| Sbjct 4825710 GATACTATTGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 4825769 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || ||||| | || |||| | || | | |||||||| Sbjct 4825770 CAAAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAAT 4825829 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||||||||| Sbjct 4825830 ATTCAAAAAGAATCTAC 4825846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412814827351253