Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq3431 113 8e-20 >seq3431 Length=1311 Score = 113 bits (124), Expect = 8e-20 Identities = 256/383 (67%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 45347 GCGGTTAACTGTCATCACAACTATGTTGCCATGGAAAACCATTTTGATACCAATGTCCTG 45406 || || ||||| || ||||||||||| | || |||||||| | ||||| ||| Sbjct 1060 GCAGTGAACTGCCACCACAACTATGTGACGCGCGAGAACCATTTCGGCGAGAATGTGCTG 1001 Query 45407 GTCACCCGTAAAGGTGCAGTGCGGGCGCGTATAGGTGATCTAGCGATTATCCCGGGTAGC 45466 |||||||| || || || ||||| ||| | || | || | ||| ||||||||| | Sbjct 1000 GTCACCCGCAAGGGGGCGGTGCGCGCGGCCAAGGGCGTGCTGGGGATCATCCCGGGTTCC 941 Query 45467 ATGGGCGCGAAGTCGTTTATTGTCGAAGGTCTGGGTAACCAGGAAAGCTTCTGTTCATGT 45526 |||||||| |||||||| || || || || || |||| ||| ||| || | Sbjct 940 ATGGGCGCCAAGTCGTTCATCGTGCGCGGGCTCGGCAACCCGGACTCGTTC--GACAGCT 883 Query 45527 TCA--CATGGTGCTGGTCGTTTACTGTCGCGCTCAGCGGCAGTGAAACAATTCAGTCTGG 45584 || || || || || || | |||| ||| | ||||| ||| | | | || | Sbjct 882 GCAGCCACGGCGCGGGGCGCGTGATGTCCCGCACCGCGGCCAAGAAGCTGGTGACGCTCG 823 Query 45585 AAGACCATATCCGTGATACCGAGGGTGTGGAATGCCGTAAAGACAAAGACGTTCTTGATG 45644 | || |||||| || || | ||| || | ||||| || ||| ||| ||| | || | Sbjct 822 ACGAGCATATCGCCGACACGGCGGGCGTCGCCTGCCGCAAGGACGAAGGCGTGATCGACG 763 Query 45645 AAACACCGAAGGCATATAAGTCGATTGAAGACGTGATGCGGTCACAAGACGATTTGGTGA 45704 | || || | ||| |||||| |||| |||| ||||||| | || | |||| ||||| Sbjct 762 AGACGCCCAGGGCCTATAAGCCGATCGAAGCCGTGATGGCTGCCCAGGCCGATCTGGTGG 703 Query 45705 AAATCAAATACACTCTGAAACAG 45727 | ||| |||| |||| ||| Sbjct 702 AGATCGTCCACACGTTGAAGCAG 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867283110995040