Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq8 145 1e-29 seq3 100 4e-16 seq12 95.1 2e-14 >seq8 Length=13546544 Score = 145 bits (160), Expect = 1e-29 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||| | |||||| |||| ||||| || || || |||| |||||| ||| | | |||| Sbjct 1794338 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGTGAAAAGGATGTT 1794397 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 | ||||| | | ||| |||| |||||||| ||||||| |||||||||| || ||| Sbjct 1794398 CATATTTGGGATGCAAATAGTTCACGTGAATTCTTAGATTCTTGTGGTTTTATAGATAGA 1794457 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1794458 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 1794502 >seq3 Length=13234341 Score = 100 bits (110), Expect = 4e-16 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 163001 AAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAA 163060 || ||||| ||||| ||| | ||| || ||||| ||| ||| | || || ||| Sbjct 13168062 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 13168121 Query 163061 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 13168122 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 13168180 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC--G 163177 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || | Sbjct 13168181 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 13168240 Query 163178 GCATCAAGATATATTTATACCA 163199 | || ||||||||| ||||| Sbjct 13168241 TCCTC--GATATATTTTTACCA 13168260 >seq12 Length=11902654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCAC-AGATA 192984 || ||| || || | ||| |||| ||||||| || ||||| | || || || |||| Sbjct 1585971 AATGGATACTTTAGCACATGTATTATATTATCCTCATAAACCTTTAGTAACTACTAGATC 1585912 Query 192985 T-TGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || || | | | || | |||| || ||| |||||| ||| ||||||||| Sbjct 1585911 TATGGAATATCTTAGAT-TTCGTGAATTA-CCTGCTGGAATTAATAGTATAGTTGCTATA 1585854 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 193103 || ||||||||||||||||||||||| ||| ||||||||||| | || ||||| Sbjct 1585853 TTATGTTATACTGGTTATAATCAAGAAGATAGTGTTATTTTAAATGCTAGTGCTGTTGAA 1585794 Query 193104 AGAGGATTATTTGGTACTATAACTTATA 193131 ||||| || ||| | || || ||||| Sbjct 1585793 AGAGGTTTCTTTCGATCTGTATTTTATA 1585766 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || |||| || ||||||||| |||| | |||| | ||||||| |||||||| Sbjct 1585348 CGTATTCCACAAATTGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGTGG 1585290 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || ||| |||||| |||||||||||| | | |||| | |||||| ||||| Sbjct 1585289 AATTCAATATAGACAAGAGGATATGCCATTTTCGTGTGAAGGTCTTACACCAGACATTAT 1585230 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || ||||||||| | ||||| ||| ||| | |||| Sbjct 1585229 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 1585180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635135352749880