Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq8 113 6e-20 >seq8 Length=13546544 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 180428 GAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAATGATATTGGTGTT 180487 ||||| |||||| | || ||||| | |||||| | || |||| ||| | | |||| Sbjct 1794338 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGTGAAAAGGATGTT 1794397 Query 180488 AAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGA 180547 | | ||| ||| ||| |||| ||| | || |||||||||||||| ||| | || Sbjct 1794398 CATATTTGGGATGCAAATAGTTCACGTGAATTCTTAGATTCTTGTGGTTTTATAGATAGA 1794457 Query 180548 AAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 180592 ||||||| |||||||| || |||||||||||||||||||||||| Sbjct 1794458 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 1794502 Score = 104 bits (114), Expect = 3e-17 Identities = 168/236 (71%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 180637 AGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCC-GAA 180695 |||||| || ||||||| |||||||||| | ||| | || |||| |||| ||| Sbjct 1794629 AGGTATTGATCAATTAAAAGAAGTTATAGATAAGATACGATATTCTCCC-AATGATAGAA 1794687 Query 180696 GAATAATCATAGATAGT-TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGT 180754 |||| || || || || |||||| | | | ||| | |||||| | || || ||| Sbjct 1794688 GAATTATAAT-GACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGT 1794746 Query 180755 CACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAA 180814 || ||||| || ||||||||||| || ||| || | ||| |||||| | |||||| Sbjct 1794747 CATTGTTTCGTTCAATTTTATGTAAGCAATGAA---GAATTATCATGCCAACTTTATCAA 1794803 Query 180815 AGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTTTT 180870 ||| ||| ||| | || | |||||||||| ||||||||| | ||||| || || Sbjct 1794804 AGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTATT 1794859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655236415689000