Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq8 145 1e-29 seq3 109 7e-19 seq12 84.2 3e-11 seq110 82.4 1e-10 >seq8 Length=13546544 Score = 145 bits (160), Expect = 1e-29 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672 ||| | |||||| |||||||||| || || || |||| |||||| ||| | | |||| Sbjct 1794338 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGTGAAAAGGATGTT 1794397 Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 171732 | ||||| ||| ||| |||| |||||||| ||||||| || || |||| || ||| Sbjct 1794398 CATATTTGGGATGCAAATAGTTCACGTGAATTCTTAGATTCTTGTGGTTTTATAGATAGA 1794457 Query 171733 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 171777 ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1794458 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 1794502 >seq3 Length=13234341 Score = 109 bits (120), Expect = 7e-19 Identities = 148/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 165163 AAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAA 165222 |||||||| ||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 13168062 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 13168121 Query 165223 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 13168122 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 13168180 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC--G 165339 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || | Sbjct 13168181 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 13168240 Query 165340 GCATCAAGATATATTTATACCA 165361 | || ||||||||| ||||| Sbjct 13168241 TCCTC--GATATATTTTTACCA 13168260 >seq12 Length=11902654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||||| || |||| || ||||||||| ||| | |||| | ||||||| |||||||| Sbjct 1585348 CGTATTCCACAAATTGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGTGG 1585290 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 || ||| |||||| |||||||||||| | | |||| | |||||| ||||| Sbjct 1585289 AATTCAATATAGACAAGAGGATATGCCATTTTCGTGTGAAGGTCTTACACCAGACATTAT 1585230 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 |||||||| || |||||| || | ||||| ||| ||| | |||| Sbjct 1585229 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 1585180 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 192500 ATTAAATTATCCACAAAAACCACTTGTTACCAC-AGATAT-TGCAAAATTTAATAAATTA 192557 |||| ||||||| || ||||| | || || || |||| | || || || | | | || Sbjct 1585950 ATTATATTATCCTCATAAACCTTTAGTAACTACTAGATCTATGGAATATCTTAGAT-TTC 1585892 Query 192558 GACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAAC 192617 | |||| || ||| |||||| ||| ||||||||| || |||||||| ||||| Sbjct 1585891 GTGAATTA-CCTGCTGGAATTAATAGTATAGTTGCTATATTATGTTATACTGGTTATAAT 1585833 Query 192618 CAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATA 192677 |||||||| ||| ||||||||||| | || |||||||||| || ||| | || || Sbjct 1585832 CAAGAAGATAGTGTTATTTTAAATGCTAGTGCTGTTGAAAGAGGTTTCTTTCGATCTGTA 1585773 Query 192678 ACTTATA 192684 ||||| Sbjct 1585772 TTTTATA 1585766 >seq110 Length=147519 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 50319 AGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAG 50378 |||||| ||| ||| | || ||| | ||||| ||| | |||||| |||| | Sbjct 58979 AGATGGCGATTTAGTAATTTTCAATCGACAACCGACATTACATAAAATGAGTATGATGGG 58920 Query 50379 TTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAAT-TTAGCTATGACTAAAG 50437 | || ||| ||| | |||| | |||||| |||||| |||| | | || | Sbjct 58919 TCATAGAGTAAAAGTCTTACCATGGAGTACATTTCGTATGAATCTTAGTTGT-ACATCAC 58861 Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||| ||||| ||||| ||||||||||||||||||| || |||||| |||||| Sbjct 58860 CATATAATGCCGATTTCGATGGTGATGAAATGAATTTACATGCCCCACAATCA-ATGGAG 58802 Query 50498 -CTACTGCTGAATTACAA 50514 || ||| ||| || || Sbjct 58801 ACTCGTGCAGAAGTAGAA 58784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628489394818560