Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq3479 190 2e-43 >seq3479 Length=4283 Score = 190 bits (210), Expect = 2e-43 Identities = 819/1278 (64%), Gaps = 69/1278 (5%) Strand=Plus/Plus Query 25553 AAGCCATGAGCGAAACCAGGAGGAATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAGA 25612 || ||||| || || |||| || ||||| || || ||| |||||||||| Sbjct 997 AAACCATGTGCAAATCCAGCGGGTATCCAGAACTGACGAAGATTTTTTTCAGATAGCTCG 1056 Query 25613 ACACCTACCCATTCTCCAAATGTTGGACTACCAACCCTAATATCTACAGCAACATCATAA 25672 || || ||||||| ||||| |||||| || ||||||||||| ||||| | Sbjct 1057 ACTCCCACCCATTGACCAAAAGTTGGAGATGATGTCCGTATATCTACAGCGACATCCCAT 1116 Query 25673 ACTTCACCACGAACACAGCGTACCAACTTCCCTTG------TGGGTTTTTCTTTTGAAAA 25726 ||| |||| || | ||| | || ||||| ||| ||| ||| || || Sbjct 1117 GCTTTTCCACTGACTACTCTTACAAGTTTTCCTTGAGCATGTGGATTTATCT---GATAA 1173 Query 25727 TGAAGCCCACGTAGAACTCCTCGGATAGAACGTGAATGGTTATCTTGGACAAAGTTT--- 25783 || | ||||| | || |||| ||| |||||| |||||||| ||||| ||| Sbjct 1174 TGCAATCCACGGATTACACCTCTATGTGAAATTGAATGATTATCTTGTACAAAATTTACA 1233 Query 25784 --TGTTTACCTATGTATTGATCATATAAA----------GCCTGATTAAAACTTTCTAAG 25831 || || ||| | |||| | || || | ||| ||||||||||| | Sbjct 1234 ATTGATTGATTATATGATGATAAAATGAAATTAAAGGTTGTCTGGTTAAAACTTTCCATA 1293 Query 25832 AAAAAGCCACGTTCATCTCCGTAAACGTCAGGTTGAATGATCAACAAATCTTCGATTTTT 25891 || ||||||| | ||| | |||| |||| | |||| || ||||| ||||| Sbjct 1294 AACCAGCCACGATTGTCTGCAAAAACTCTCGGTTCTAAAATCAGCAGATCTTTAATTTTA 1353 Query 25892 GTTGCTTGAATCA--TTTA-ATTCCCCTTTTATTTTAA--------------TTTAAGTA 25934 || | ||||| || | |||| ||| || || ||| | || Sbjct 1354 GTCTC---AATCACATTCATATTCAGGCTTTCCTTGAAAATTCACTATATAGTTTTAATA 1410 Query 25935 AATACTTACCGTAGTCTGTTTTACTTAAAACCTCTCCAGAACTTTTTACA---GAGTCTA 25991 ||| | ||| || |||||||| | |||| | | | | ||| ||| || |||| Sbjct 1411 GATATTGACCATAATCTGTTTTT-TGAAAAAGTTTACCGCG-TTTAAACAATTGA-TCTA 1467 Query 25992 AAGTAATCCATTCATTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTT 26051 || ||||| ||| ||||||||||| ||||| |||||||| | || | ||| ||| Sbjct 1468 AATCTATCCAGCTATTATTAAAAGCAATTTCTTCAAGGCATGCTATTTTTAAACCCTGTC 1527 Query 26052 GCTTCTCTATTGCATGAACAAATTGAGAT-GCTTCCATAAGACTTTCATGTGTTCCTGTA 26110 || || || | |||||||| || | ||||| || || |||||||| || ||| Sbjct 1528 TTTTTTCAATAGTCTGAACAAA-GCAGCTGGCTTCAATCAGTGAATCATGTGTACCAGTA 1586 Query 26111 TCCAGCCAAGTGAAACCTCTTCCTAGT-TTACAGACACGTAA-AGTCTTTTCTTTCCAGT 26168 |||||||| | || || | || ||| || || ||| ||| | | | || ||| | | Sbjct 1587 TCCAGCCATGCAAAGCCACGCCCGAGTATTTCA-ACATTTAATAATTTCTTATTT-AAAT 1644 Query 26169 ACATCTCATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAG 26228 | | || ||||| || || || | || ||||| | ||||| || ||||| | Sbjct 1645 AAGCATTGTTAATATCGGTTATTTCGAGTTCACCTCTGGGTGAAGGACGAATACTCTTGG 1704 Query 26229 CTTTCTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttg 26288 || ||| ||||| |||||| ||||| ||||| ||||| || || || || ||||| Sbjct 1705 CTATCTCAATAACGTCATTATCATAAAAATACAATCCTGTAATCGCATAATTTGATTTTG 1764 Query 26289 gtgtttttggtttttCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACAC 26348 | || ||||||||||| || | || | || | | ||||| || || |||| Sbjct 1765 CTTCATTCGGTTTTTCTTCTATGGAAAGTGCTTTTCCATTTGTGTCAAATTCGACTACAC 1824 Query 26349 CAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAA 26408 | |||| ||||| ||||| || | ||| || || | |||| || ||||| Sbjct 1825 CGAATCGCTCAGGGTCATTAACATAATAACCGAATACGGTAGCACC------TTTTTC-- 1876 Query 26409 TATGTTCTTTAGCAGAATCTAA-AATGCTACCAAAACTCTGACCAAAGAATAAATTATCA 26467 |||| | || | ||| ||| ||| ||||| || || | || | |||||| Sbjct 1877 -TTGTTGTGCTGCCTTTTGTAATTGTGC-ACCGAAACTTTGCCCGTAAAAAATGTTATCA 1934 Query 26468 CCTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCT-CACCAATAATAAACGCTTC 26526 || || | ||||| ||| ||||| |||||||| |||| | || | ||| || |||| Sbjct 1935 CCCAGAATAAGTGTGACATTATCTTTGCCAATAAA-TTCTGCTCCGAGAATGAAAGCTTG 1993 Query 26527 TGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACC 26586 ||| || || | || |||| | ||| || ||| || ||| || Sbjct 1994 TGCCAATCCGTCAGGAGATGGTTGTACTTTATAAGATAAATCAATTCCTAAATCTCTGCC 2053 Query 26587 ATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTC 26646 ||||||| | ||| ||||||| | |||| | || |||| ||| || | ||||| Sbjct 2054 GTCACCTAACATTTTTTTAAAATTAGGTAAATCTGCAGGAGTTGAAATAATCATGATTTC 2113 Query 26647 CCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAAT 26706 | || || | ||||| || ||||| || ||||| |||||||| |||||||| ||||| Sbjct 2114 TCGTATCCCGGCCAGCATAAGTACAGAAAGGGGATAGTAAATCATCGGTTTATCATAAAT 2173 Query 26707 TGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACC 26766 ||||||| ||||| || ||| ||||| || ||||| || ||||| || || Sbjct 2174 GGGTAATAACTGTTTTGATACGCCTAAAGTAATAGGATAAAGTCTGGTTCCGGATCCGCC 2233 Query 26767 TGCTAAGATAATACCTTT 26784 || | |||||||| || Sbjct 2234 AGCCAGTATAATACCCTT 2251 Score = 123 bits (136), Expect = 2e-23 Identities = 281/413 (68%), Gaps = 21/413 (5%) Strand=Plus/Plus Query 27028 ACATCAATATTAGTTCTAGGGTTTCTGCTC-CCAATATTATATGTCTCTCCAGATTTGCC 27086 ||||||||||| |||| || ||| | ||||||||||| || || | |||| | Sbjct 2619 ACATCAATATTT-TTCTGTTCATTATGCCCACCAATATTATAGGTACTGCCTGCTTTGGC 2677 Query 27087 TTTAGTTACTACTAGGTGTAATGCCTCTG-CGTGATCGTCAACGTATAACCAGTCTCTTA 27145 ||| || || || | | ||| || |||| ||||||| ||||| || | |||||| | | Sbjct 2678 TTTTGTGACAACCTGATATAAAGC-TCTGGCGTGATCTTCAACATACAGCCAGTCCCGGA 2736 Query 27146 CTTGAAGACCATTACCATAAACAGGGATTGGTTTATGCATTAAGATATTTGTTATCGTTT 27205 ||| ||||| ||||| ||||| | | |||| ||| ||| || ||| Sbjct 2737 TTTGTTCGCCATTTCCATATACAGGCAGTTTTTTACCTTGTAAAGCATTAAGAATAGTTA 2796 Query 27206 TAGGTATTAGTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTATAA 27265 || |||| ||| || || |||||| | |||| ||||||| ||||||||||| |||| Sbjct 2797 ATGGGATTAATTTCTCCGGGAAATGATAAGGTCCATAATTATTCGAACAATTTGTAATAA 2856 Query 27266 CTGTCGGAATACCATAAGTACGATGCCACGCTCTTACCAAATGATC---GCTTGCAGCTT 27322 || | ||||||||||| ||||| || | |||| |||||| ||| || | Sbjct 2857 TAACAGGCAGTCCATAAGTACGGTGCCAGGCACGAACCAGATGATCTGAACTT---GCCT 2913 Query 27323 TAGATGCAGCATATGGACTACTTGGTTTATAAGGATTCTGTTCTGTAAACGGATAA-TCT 27381 || || | |||||| |||||| || ||| | |||||||| |||| ||| Sbjct 2914 TACTGGCTGAATATGGTGAACTTGGAGCGTATGGAGTAGATTCTGTAA----ATAATTCT 2969 Query 27382 --CCT----TCTTCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAA 27428 || || ||||||||||| |||||||| |||||||| |||||||| Sbjct 2970 GAACTTAAATCACTAAGATCACCATATACTTCATCAGTTGAAATGTGATGGAA 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475398777935520