Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq2650 322 2e-82 seq1 89.7 2e-12 >seq2650 Length=1381 Score = 322 bits (356), Expect = 2e-82 Identities = 579/839 (69%), Gaps = 33/839 (4%) Strand=Plus/Plus Query 188756 AAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAA 188815 ||||||| ||| || ||| |||| || ||||||||||||||||||| || ||||||| Sbjct 163 AAAAATCAAATATTGCTTTGATTGGACCAACTGGTTCAGGTAAAACATACTTGGCTCAAA 222 Query 188816 CATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAG 188875 | || || ||| ||| |||| ||| | || || ||||||||||| ||||||| || | Sbjct 223 CTTTAGCCCGTATTTTAGATGTGCCTTTTGCCATAGCTGATGCAACTACTTTAACTGAGG 282 Query 188876 CTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATT 188935 | || ||||| ||||||||||| |||||| | || ||| ||| | || || |||| Sbjct 283 CAGGCTATGTTGGTGAAGATGTTGAAAACATTTTACTTAAATTATTACAGAATGCAGATT 342 Query 188936 ACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTA 188995 | || |||||| || ||||| ||||| | || || |||||| | ||||||||| ||| Sbjct 343 ATGACATCGAACGTGCAGAACGGGGAATAATTTACATTGATGAAATTGATAAAATTTCTA 402 Query 188996 GAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTT 189055 ||| || |||| || ||||| ||||||| || || ||||| || |||||| | | Sbjct 403 AAAAGTCTGAAAATGTTTCAATTACTAGAGATGTTTCCGGTGAAGGCGTTCAGCAATCAT 462 Query 189056 TATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACC 189115 |||| ||||| | |||||||| |||| ||||| || ||||||||||||||||| | Sbjct 463 TATTGAAAATTTTGGAAGGTACTATTGCTTCCGTTCCACCACAAGGTGGTCGTAAACATC 522 Query 189116 CTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGT 189175 |||| |||||| | | | ||| |||| ||||| || || ||||| |||||||||| | Sbjct 523 CTCAACAAGAATTAATACAGATAAATACCACTAACATTTTATTTATAGTTGGTGGAGCTT 582 Query 189176 TTGATGGTCTTGAAAACATTATCAAGAGACG---CGCTACAAAATCAACTTTAGGTTT-- 189230 | |||||| | ||| | ||| |||| || || | || |||| || | ||||| Sbjct 583 TCGATGGTATCGAACAAATTGTCAAAAGTCGTTTAGGTAAAAAAGTAA---TCGGTTTTA 639 Query 189231 -TGATGATAGTG---TAGATAAAGTACAAGAAGAAATCAAGGATGACAATAAAGTATTCC 189286 || ||| | || | ||||||| ||||| | | || || | |||| | Sbjct 640 GTGCTGAAAATGAGCTTAATAAAGTGCAAGATG-ATTCTTGG-----ACTAAA------C 687 Query 189287 AACATCTTCAACCGCA--AGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCG 189344 | || ||| || || | ||||| | ||| | ||||||||||||||||| || Sbjct 688 A-----TTTAACGACAGGGGACTTGGTTAAATTTGGGCTGATTCCAGAATTTATTGGTCG 742 Query 189345 TGTACCAGTAATCGCAACTCTTA-ACAAACTTGATCGAGATGCATTGATTAACATTTTAA 189403 | | || | || || || |||| | || | ||| || | | || ||| ||||||| Sbjct 743 TATTCCTATTATTGCTAC-CTTAGATAAGTTAGATAGAAACGATTTAGTTAGAATTTTAA 801 Query 189404 CTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGG 189463 |||| || | ||||| | | || |||||| | |||||| | | ||| || Sbjct 802 CTGAACCTAAGAACGCGCTGGTAAAGCAATATAAAAAATTGATGTCGCTTGATCAGGTTA 861 Query 189464 AATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATA 189523 | |||||||| || || ||| || | ||||| ||| || ||||| ||||||| Sbjct 862 ACTTAGAATTTACCCCGGATGCTTTAAAAGCTATTGCGGATTTGGCCATTGACCGTAATA 921 Query 189524 CTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGAA 189582 || || || || || | | || ||||||||| ||| | | | | |||||| || Sbjct 922 TGGGAGCACGTGGCTTGCGGACAATAATTGAAAATGCAATGATGGGTATCATGTATAAA 980 >seq1 Length=29893408 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46593 GACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTATTACCTTATGTTGAAGAT 46652 || |||||||||||||| |||||| || |||||| || ||||| |||||||| | Sbjct 26654656 GATGAAATACATCGTTTTAATAAAAATCAACAAGATGTATTTTTACCACATGTTGAATCT 26654715 Query 46653 GGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTTT 46696 || | ||||| ||| ||||||||||||| |||||||| | ||| Sbjct 26654716 GGTATTATTACATTAGTTGGTGCAACAACAGAAAATCCTTCTTT 26654759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591801871011008