Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1 120 5e-22 seq6 89.7 9e-13 seq10 86.0 1e-11 seq4 84.2 4e-11 >seq1 Length=29893408 Score = 120 bits (132), Expect = 5e-22 Identities = 279/416 (67%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 142809 AAAATATTGATAGGTATAACTGGCAGCGTAGCTACTGTTAAGTTACCTCATCTAATAAAA 142868 || || ||||| ||| ||||| || || || || |||| ||||| || || || | Sbjct 7176373 AAGATTTTGATTGGTTGTACTGGTAGTGTTGCAACAATTAAATTACCACAATTAGTAGAT 7176314 Query 142869 GAATTAACTCGTTTAGAAAATATAGAATTAAGAATAGTCGCTACAGAAAATGCTATGAAA 142928 ||||| ||| | ||| | ||| | |||||||| | ||| ||||| |||| | | Sbjct 7176313 AAATTATGGCGTA---ATAATTTTGAAGTGAGAATAGTAGTTACTGAAAAAGCTAAGCAT 7176257 Query 142929 TTT---ACAGACCAAAAAA---CTTTAGGTATTCCTATTTATACAGATAAAGATGAGTGG 142982 || | ||| | || || ||| |||| ||| | |||| || || ||| Sbjct 7176256 TTCTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGTGGAATGG 7176197 Query 142983 ACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAG-GAGATGGGCGGA 143041 || ||||| || | | ||||| || |||||||| || |||| || |||||| || Sbjct 7176196 GCTGCTTGGCAAGACAGGGGTGATCCTGTATTGCATATTGAT-TTAGTGAAATGGGCCGA 7176138 Query 143042 TGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATG 143101 | | ||| | || || || ||| || ||||| | | |||||||| | |||||||| Sbjct 7176137 TTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGCAAAATAGCTAGTGGTATATG 7176078 Query 143102 CGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTG 143161 |||||| || |||| | | | | | | ||||||||| | || ||| | | ||||| Sbjct 7176077 TGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGGTCTTTTG 7176018 Query 143162 TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATG 143217 ||| || ||||||| ||||||||||||||| |||| | || ||| || ||| Sbjct 7176017 TCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCAACACAGGTATATG 7175962 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| ||||| ||||| ||||| || || ||||| | |||||||| Sbjct 27602350 AGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGTTCTTCCATCTTCTAATTGTTTA 27602409 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| | ||| | ||| |||| || ||||||||||| || Sbjct 27602410 CCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGCC 27602469 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||||| || |||| Sbjct 27602470 TTTACGTTTTCTATTGTAT 27602488 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| ||||| ||||| ||||| || || ||||| | |||||||| Sbjct 27601894 AGAGTAGATTCTTTCTGAATATTGTAATCTGAGAGTGTTCTTCCATCTTCTAATTGTTTA 27601953 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| | ||| | ||| |||| || ||||||||||| || Sbjct 27601954 CCAGCAAAGATTAAACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGCC 27602013 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| || || || |||| Sbjct 27602014 TTTACGTTCTCTATTGTAT 27602032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/132 (73%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| || |||||||| || |||||||| | |||||||| ||| Sbjct 27604557 ATTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAA 27604616 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||||| | ||||||| | ||| | ||| |||| || ||||||||||| ||||| | || Sbjct 27604617 AGATTAAACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTAACAT 27604676 Query 81760 TTTCAATCGTAT 81771 | || || |||| Sbjct 27604677 TCTCTATTGTAT 27604688 >seq6 Length=18472937 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || ||||| ||||| || ||||| | || |||||||| Sbjct 4825849 AGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAATTGTTTT 4825790 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | ||||||||| | ||| | || |||| || ||||||||||| ||| Sbjct 4825789 CCAGCAAAGATCAATCTTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTAGCT 4825730 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||||||||| |||| Sbjct 4825729 TTTACATTTTCAATAGTAT 4825711 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/130 (74%), Gaps = 11/130 (8%) Strand=Plus/Minus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAAAG 81701 || || || |||||||||||||||| || | | |||||||| ||||| Sbjct 4824700 TCTTTTTGAATATTATAATCAGATAATGTACGCCCATCTTCTAATTGTTTACCAGCAAAG 4824641 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 || | |||||| ||| |||| | ||| ||||||| |||||||| || ||||||| |||| Sbjct 4824640 ATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTT 4824581 Query 81762 TCAATCGTAT 81771 ||||| |||| Sbjct 4824580 TCAATGGTAT 4824571 >seq10 Length=12965953 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 ||||||||||||||||||| || || | || ||| | ||| ||||||| ||||| Sbjct 7286230 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 7286171 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACAT 183316 ||||||| || ||||||||||||||||| | | ||| |||||| | ||||| || Sbjct 7286170 TTGGAAAAATTAGATATATGAATTATGAAGGCTGTAAACGAAAATTTAACATTGCTGAAT 7286111 Query 183317 TT 183318 || Sbjct 7286110 TT 7286109 >seq4 Length=12718334 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 82047 GTGTTTATATTTATGTAGAGCTTGTCTAGCTTTAGGTATTAATATAGTTTTATCCGTTTC 82106 |||||||||||||| ||| || | ||| ||||| | |||| | | | | ||| ||||| Sbjct 9769144 GTGTTTATATTTATTTAGTGCCTCTCTTGCTTTTGAAATTAGAAGATTGTCATCAGTTTC 9769085 Query 82107 TAATTTGAATGATACTACAAAAGCATTTGGACACCATTCATCTACTAAATGAAATAACAT 82166 ||||||||| ||||| |||||||| | |||| |||| | ||| | | || ||| || Sbjct 9769084 TAATTTGAAAGATACCACAAAAGCTTCTGGAACCCATAAACTTACAAGAGGAGCTAAGAT 9769025 Query 82167 TTTAGGGAC 82175 ||| || || Sbjct 9769024 TTTTGGTAC 9769016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903351111862560