Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 122 2e-22 seq110 109 1e-18 seq6 93.3 1e-13 seq8 86.0 1e-11 seq9 84.2 5e-11 >seq5 Length=14363272 Score = 122 bits (134), Expect = 2e-22 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 ||| |||||| |||||| ||| || ||||| || | |||||||||||||| || Sbjct 13443042 TGACATTGTTGAAAGACATCTGAGGGATGATGATGTAGTATTATTCAATAGGCAACCGTC 13442983 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA-CATTTC 305411 | | |||||| | || ||||| ||||||| ||| ||||| | || || ||||| Sbjct 13442982 ATTACATAAATTAAGCATCATGGCACATAAAGCAAAAATATTAGATC-ATAGAACATTTA 13442924 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 |||| |||| | ||| |||||| || |||||||| ||||| || || |||||||||||| Sbjct 13442923 GATTTAATGAATGTGTTTGTACTCCATATAATGCTGATTTCGACGGCGATGAAATGAATT 13442864 Query 305472 TGCATGTACCTCAA 305485 | || || |||||| Sbjct 13442863 TACACGTTCCTCAA 13442850 >seq110 Length=147519 Score = 109 bits (120), Expect = 1e-18 Identities = 123/161 (76%), Gaps = 8/161 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| || | ||||||||| |||||||| ||||| ||| ||||| ||| Sbjct 58960 TTCAATCGACAACCGACATTACATAAAATGAGTATGATGGGTCATAGAGTAAAAGTCTTA 58901 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTT 305451 | |||| | |||||||| | ||| | ||| ||||| || |||||||| ||||| Sbjct 58900 CCATGGAGT-ACATTTCGTATGAATCTTAGT---TGTACATCACCATATAATGCCGATTT 58845 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 ||||| |||||||||||| | |||| || ||||||| || Sbjct 58844 CGATGGTGATGAAATGAATTTACATGCCCCACAATCAATGG 58804 >seq6 Length=18472937 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 111054 TCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCT 111113 || ||||||||||| |||||||| ||||| | ||||||||||| ||||||||||| Sbjct 6968948 TCTCAAGTTGAAACAGGAACTCCATATATGCTTTATAAAGATCACTGCAATCGCAAATCA 6969007 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| ||| |||||||||| ||| ||||||||| || Sbjct 6969008 AATCATCAAAATATAGGAACAATAAAGAGTAGTAATTTATG 6969048 >seq8 Length=13546544 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/175 (73%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 58831 CATTATATGAAGCAATACGGAGTATGAAACCATATTAAAAGGGATTCCAAGAAACATATC 58890 || ||||| || |||| || || || | |||||||| || | |||||| |||||| Sbjct 1794872 CAGTATATAAATTAATAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATC 1794813 Query 58891 ACCACTACGTTGATAAAATTGTAGATTAAGAGTGT-CATCTGCTTCTACATAAAATTGAC 58949 |||| | |||||||| ||| || | | | | ||| ||||| |||||||||||| Sbjct 1794812 CGCACTTCTTTGATAAAGTTGGC-ATGATAATTCTTCAT-TGCTT--ACATAAAATTGAA 1794757 Query 58950 ATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACATTCCATGC 59004 ||| |||||||||||| | |||||||| ||||||| || ||||||||| Sbjct 1794756 CGAAACAATGACAAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGC 1794702 >seq9 Length=11120453 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | || || ||||| |||||||| | |||| ||||||||||| ||||||| |||| Sbjct 5449917 TCATCATTCCTCCGGCATTGTCGAATTC-TCCGCAATAATTTGGTGCGGAAAATAAAGTA 5449975 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC 167350 ||||| | | || ||| |||||||| |||||||| || |||| ||| || Sbjct 5449976 ACTAACTGTCTTTTTGCAAAAAATTCATACCCATCTTCGACTACTTGATGTGC 5450028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186731888666481