Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq4 95.1 1e-14 >seq6 Length=18472937 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | || ||||||||||| ||||| ||| | ||||| | Sbjct 4824952 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4824893 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||||| | |||| | | ||||||||| ||||| || ||||||||| Sbjct 4824892 TCTTCCAGCTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTA 4824833 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||| | | || ||||| | || | Sbjct 4824832 TCCTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATA 4824773 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | ||||| ||||| Sbjct 4824772 GTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824738 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | || ||||||||||| ||||| ||| | ||||| | Sbjct 4825180 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4825121 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || |||||||||| | |||||| | ||||||||| ||||| || ||||||||| Sbjct 4825120 TCTTCCAGTTGTTTACCGGCAAAGATTAATCTCTGTTGATCAGGAGGAATACCTTCTTTA 4825061 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||| | | || ||||| | || | Sbjct 4825060 TCCTGAATTTTGGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATA 4825001 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | ||||| ||||| Sbjct 4825000 GTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824966 Score = 118 bits (130), Expect = 1e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| ||||| || ||||||| |||| ||||||||||| ||||| || | ||| Sbjct 4826326 CGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAAAGTGTA 4826267 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| || |||||||| | | | || | | ||| ||||||||||| || || Sbjct 4826266 CGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGGATACCC 4826207 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| | | |||| |||| ||| | ||| | |||||||| | || || || | Sbjct 4826206 TCCTTATC-TTGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCTTCAACCTCCAA 4826148 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || |||||||| | |||||| ||||| Sbjct 4826147 AGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCAT 4826106 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | |||||||||||||| ||||| ||| | ||||| | Sbjct 4826548 CGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4826489 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || || |||||||| | | |||||| | ||||||||| || || || |||||||| Sbjct 4826488 TCCTCCAGTTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGGGGAATACCTTCTTTG 4826429 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | ||| | ||||||| | || ||||| | || | Sbjct 4826428 TCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGAAGCTTCTACTTCAAGAGTAATA 4826369 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||||||| | |||||| ||||| Sbjct 4826368 GTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 4826334 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| || ||||||| |||| ||||||||||| || || || | ||||| Sbjct 4826096 CAAACGCAATACTAAATGTAATGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACG 4826037 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||||||||| | | | || | | ||| ||||||||||| || || || Sbjct 4826036 ACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATACCCTC 4825977 Query 132025 TTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 ||||| | | |||| |||| ||| | ||| | |||||||| | || || || | | Sbjct 4825976 CTTATC-TTGAATTTTAGTTTTAACATTTTCGATAGTATCGGATGCTTCAACCTCCAAAG 4825918 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | ||||| || || ||||| || | |||||| ||||| Sbjct 4825917 TGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATTTGCAT 4825878 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | || ||||||||||| || || ||| | ||||| |||||| Sbjct 4825631 AACGAGATGAAGGGTCGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTC 4825572 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || |||||||||| | |||| | | ||||||||||||||| || ||||||||||| Sbjct 4825571 CAGTTGTTTACCGGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTATCCTG 4825512 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||| | | || ||||||| || | || || Sbjct 4825511 AATTTTGGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCGAGAGTAATAGTCTT 4825452 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | |||||| ||||| Sbjct 4825451 TCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 || ||||||| |||||||||||||||| || || || | | || |||||| |||||| Sbjct 4824718 ACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAAT-GTACGCCCATCTTC 4824660 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | | |||| | | || |||||||| || || ||||| || || Sbjct 4824659 TAATTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 4824600 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||| | | ||| || || | || | ||||| Sbjct 4824599 AATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTT 4824540 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACTT 132128 ||| |||| ||||| | || |||||||||| || Sbjct 4824539 ACCTGTCAATGTTTTGACAAAGATCTGCATGATTT 4824505 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || ||| | ||||| |||||| ||||||||||| | | Sbjct 4826755 GATTCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCA 4826696 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | | ||||||||| ||||| || |||||||| || ||||||| ||| | Sbjct 4826695 AAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACA 4826636 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | | || ||||| | || | |||||||| || ||||| || Sbjct 4826635 TTTTCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTG 4826576 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 4826575 ACAAAAATTTGCAT 4826562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | |||||||||||||| ||||| ||| | ||||| | Sbjct 4825408 CGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 4825349 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | |||| | | |||||| || ||||| || |||||||| Sbjct 4825348 TCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTG 4825289 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | ||||| | | || ||||| | || | Sbjct 4825288 TCTTGAATCTTAGCTTTTACATTTTCAATGGTATCAGAAGCTTCTACTTCAAGAGTAATA 4825229 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||| | |||||| ||||| Sbjct 4825228 GTTTTTCCTGTAAGGGTTTTGACGAAAATTTGCAT 4825194 >seq4 Length=12718334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| || ||||| | ||||| |||||| | || || || | | | | Sbjct 12038483 CTTTTTGAATATTATAGTCCGATAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAAA 12038542 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | ||||| || ||||| || ||||| ||||||||||| |||||| ||||| | || Sbjct 12038543 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 12038602 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | | || ||||| | || | |||||||| |||| |||||| | | Sbjct 12038603 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 12038662 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 12038663 ATATCTGCAT 12038672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476579499397560