Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq35 100 9e-18 seq6 95.1 4e-16 seq4 95.1 4e-16 seq1 95.1 4e-16 seq11 89.7 2e-14 >seq35 Length=212119 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 162127 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAAT 162068 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 162067 CCCGGGTTTCGGC 162055 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 161806 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 161747 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 161746 CCGGGTTTCGGC 161735 >seq6 Length=18472937 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 13935304 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 13935363 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 13935364 CCGGGTTTCGGC 13935375 >seq4 Length=12718334 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 1116731 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 1116790 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1116791 CCGGGTTTCGGC 1116802 >seq1 Length=29893408 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 26237224 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 26237283 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 26237284 CCGGGTTTCGGC 26237295 >seq11 Length=14726556 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||| | | Sbjct 1278967 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATC 1278908 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1278907 CCGGGTTTCGGC 1278896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848677578045