Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq6 109 4e-19 seq1 109 4e-19 >seq6 Length=18472937 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| | || || || ||||| || |||| ||| | Sbjct 4826105 AATGCAAATTTTCGTCAAAACTCTTACCGGAAAAACCATCACTTTGGAGGTTGAAGCATC 4826164 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| || ||| | || ||| |||||| || || || || | || ||||| Sbjct 4826165 CGATACTATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAGGGTATCCCTCCAGATCA 4826224 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTAC 106436 || || | |||| ||| || |||||| | |||||| || | ||| | || ||||| Sbjct 4826225 GCAGAGATTGATTTTTGCTGGTAAACAACTGGAAGATGGTCGTACACTTTCGG--ATTAC 4826282 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || ||||||||||| |||||||||||||||||| | || ||||||||| Sbjct 4826283 AATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGCGAGGAGGA 4826333 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| |||||| | ||||| || || ||||| | ||| ||| | Sbjct 4824965 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4825024 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 4825025 AGATACTATTGAAAATGTTAAAGCCAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 4825084 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| || | || | ||| || |||||| | |||||| | ||| | ||||||||| Sbjct 4825085 ACAGAGATTAATCTTTGCCGGTAAACAACTGGAAGATGGTCGTACTCTTTCCGATTACAA 4825144 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||||||||||||||| ||| | || ||| Sbjct 4825145 TATTCAAAAAGAATCTACACTTCATCTTGTTTTG 4825178 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| | || || ||||| ||||| | ||| |||| | Sbjct 4825650 ATGCAAATTTTCGTCAAAACCCTTACAGGAAAGACTATTACTCTTGAAGTAGAAGCTTCT 4825709 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| || ||| ||||||||||| | || ||| ||| Sbjct 4825710 GATACTATTGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 4825769 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | ||| || ||||||||||||||| | ||| | ||||||||| Sbjct 4825770 CAAAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAAT 4825829 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || ||||||||||||||||| ||| Sbjct 4825830 ATTCAAAAAGAATCTACACTTCAT 4825853 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| | || || ||||| ||||| | ||| |||| | Sbjct 4826333 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAAGCTTC 4826392 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| | ||| | |||||| |||||| ||||||||||| | ||| |||||| Sbjct 4826393 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCCCCTGATCA 4826452 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| || | || | ||| || |||||| | || ||| | ||| | ||||||||| Sbjct 4826453 ACAGAGATTAATCTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGATTACAA 4826512 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || |||||||| |||||||| ||| | || ||| Sbjct 4826513 TATTCAAAAAGAGTCTACACTTCATCTTGTTTTG 4826546 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| |||||| | ||||| || || ||||| | ||| ||| | Sbjct 4824737 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4824796 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 4824797 AGATACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 4824856 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| || | || | ||| || ||||| | |||||| | ||| | ||||||||| Sbjct 4824857 ACAGAGATTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTACAA 4824916 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||||||||||||||| ||| | || ||| Sbjct 4824917 TATTCAAAAAGAATCTACACTTCATCTTGTTTTG 4824950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| | || || || || ||||| | ||| |||| | Sbjct 4825194 ATGCAAATTTTCGTCAAAACCCTTACAGGAAAAACTATTACTCTTGAAGTAGAAGCTTCT 4825253 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| || ||| ||||||||||| | || ||| ||| Sbjct 4825254 GATACCATTGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 4825313 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | || | ||| || ||||||||||||||| | ||| | ||||||||| Sbjct 4825314 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAAT 4825373 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || |||||||| |||||||| ||| | || ||| Sbjct 4825374 ATTCAAAAAGAGTCTACACTTCATCTTGTTTTG 4825406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||||||||| || || || || || |||| || || Sbjct 4824510 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 4824569 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||| ||||| | || ||||| Sbjct 4824570 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 4824629 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGATTACA 106437 ||||| | || | ||| || ||||||||||||||| | | | ||| | |||| | Sbjct 4824630 CAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGGCGTACATTATCTG--ATTATA 4824687 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 | || |||||||| || ||||||||||||||| | | ||| |||| ||| Sbjct 4824688 ATATTCAAAAAGAGTCAACACTACATTTAGTACTACGTTTAAGAGGTGGA 4824737 >seq1 Length=29893408 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| | ||||| || ||||||||| | ||| ||| | Sbjct 27604749 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGCTTCA 27604690 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || ||| || ||| ||||||||||| | || ||||||| Sbjct 27604689 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 27604630 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||||||| | |||| | ||||| ||| Sbjct 27604629 CAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCAGATTATAAC 27604570 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || |||||||| ||||| || ||||| ||||| | ||||| ||| Sbjct 27604569 ATTCAGAAAGAATCCACACTTCACTTAGTGTTGAGACTTCGAGGGGGA 27604522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 106255 TAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAAC 106314 |||||||||| || |||||||| || || || || || ||||| ||| | ||| ||| Sbjct 27605438 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 27605379 Query 106315 CCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTG 106374 | || | | | | || || || ||| || |||||||| | || | Sbjct 27605378 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 27605319 Query 106375 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATT 106434 |||||||| | | |||| ||| ||||||||| | |||||| || ||| | |||| Sbjct 27605318 ATCAACAACGTTTAATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTTTCAGATT 27605259 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 | || || ||||| ||||||||||| |||||||| ||||| | ||||||| Sbjct 27605258 ATAATATCCAAAAGGAATCTACACTTCATTTAGTGTTGAGACTTAGAGGAGG 27605207 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| | ||||| || || || || | ||| ||| | Sbjct 27602550 AATGCAAATTTTTGTCAAAACTCTAACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTC 27602491 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || || || ||| ||||||||||| | || |||||| Sbjct 27602490 AGATACAATAGAAAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 27602431 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | || | ||| || ||||||||||||||| | ||| | |||||||| Sbjct 27602430 ACAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACACTCTCAGATTACAA 27602371 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || ||||||||||| || ||| | |||||||| | ||||| ||| Sbjct 27602370 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGGGGA 27602322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || |||||||||| | | |||| ||| || |||||| | ||| Sbjct 27602228 GACAAAGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTTGCTGGAAAACAACTTGAA 27602169 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | |||||||| || || ||||||||||| || ||||| |||||| Sbjct 27602168 GATGGAAGAACACTCTCAGATTACAATATTCAGAAAGAATCTACTCTTCATTTGGTATTG 27602109 Query 106473 AGGTTACGAGGAGGA 106487 || | ||||||||| Sbjct 27602108 AGACTTCGAGGAGGA 27602094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||||||||| | ||||| || || || || | ||| ||| | Sbjct 27602777 ATGCAAATTTTTGTTAAAACTCTTACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTCA 27602718 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || ||| || ||| ||||||||||| | || ||||||| Sbjct 27602717 GATACAATAGAGAACGTAAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 27602658 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| || ||||| | |||||| | ||| | |||||||| Sbjct 27602657 CAACGTTTGATTTTTGCTGGAAAACAGCTTGAAGATGGAAGAACACTCTCAGATTACAAT 27602598 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || ||||||||||| || ||| | ||||| || | ||||||||| Sbjct 27602597 ATTCAGAAAGAATCTACTCTTCATCTGGTATTAAGACTTCGAGGAGGA 27602550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| | ||||| || || || || | ||| ||| | Sbjct 27604978 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 27604919 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | | | | || || || ||| ||||||||||| | ||| |||||| Sbjct 27604918 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGATCA 27604859 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | || | ||| || |||||| |||||||| | |||| | ||||| || Sbjct 27604858 GCAACGCTTGATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTCTCAGATTATAA 27604799 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||||||||| |||||||| ||||| | ||||||| Sbjct 27604798 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 27604751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| |||||||| ||||| | ||||| || || || || | ||| ||| | Sbjct 27602094 AATGCAGATTTTTGTCAAAACTCTTACTGGGAAAACTATCACTCTTGAAGTTGAAGCTTC 27602035 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || || || ||| ||||||||||| | || |||||| Sbjct 27602034 GGATACAATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 27601975 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | || | ||| || ||||||||||||||| | ||| | |||||||| Sbjct 27601974 ACAACGTTTAATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACACTCTCAGATTACAA 27601915 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || ||||||||||| || ||| | ||||| || | ||||||||| Sbjct 27601914 TATTCAGAAAGAATCTACTCTTCATCTGGTATTAAGACTTCGAGGAGGA 27601866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402303509051168