Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 seq4 86.0 6e-12 >seq6 Length=18472937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||| || ||||||| | || || | || |||||||| ||||| ||||| Sbjct 4826752 TCTTTTTGAATATTATAATCGGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAA 4826693 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGT 35664 ||||| | ||| || || | ||||| | || ||||| ||| |||||||| | | | Sbjct 4826692 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT-TGAATTTTTGCTTTTACATT 4826634 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| || || | || || ||||||||||| | ||| || || Sbjct 4826633 TTCAATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGAC 4826574 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 4826573 AAAAATTTGCAT 4826562 >seq4 Length=12718334 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||| || || || | || || || | || |||| ||||| || ||||| || Sbjct 12038485 TTTTGAATATTATAGTCCGATAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATA 12038544 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGTTGC 35667 | || ||||| || | || | | || || ||| ||| ||| |||| || | || | Sbjct 12038545 AGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCC-TGAATTTTAGCTTTCACATTTTC 12038603 Query 35668 CACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | || || | ||| || || | ||||| |||||||||||||||||||||||||| Sbjct 12038604 TATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAAA 12038663 Query 35728 TATCTGCAT 35736 ||||||||| Sbjct 12038664 TATCTGCAT 12038672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450763616590680