Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 201 2e-46 seq15 152 7e-32 >seq6 Length=18472937 Score = 201 bits (222), Expect = 2e-46 Identities = 230/309 (74%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681 ||| || || ||| || | ||||||| ||| || || || |||| ||| | | ||| Sbjct 6969920 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 6969861 Query 68682 CTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCT 68741 || |||||| ||| | | ||| ||||| || | |||||| || || |||| ||||| Sbjct 6969860 TTCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCT 6969801 Query 68742 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGC 68801 | ||||||||||| ||||| |||||||| | ||||||||||||||| | |||||| || Sbjct 6969800 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 6969741 Query 68802 AGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGAT 68861 |||||||| |||||||||||||| | || ||| |||||||| |||||| | || Sbjct 6969740 TGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 6969681 Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921 ||| | ||| | | |||||||||| | || || ||| | ||||||||| | ||| || Sbjct 6969680 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCATA 6969621 Query 68922 TTGTAGAAT 68930 ||||| ||| Sbjct 6969620 TTGTAAAAT 6969612 Score = 145 bits (160), Expect = 1e-29 Identities = 134/167 (80%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 ||||||| || ||| ||||||| |||||||||||| |||| |||||| |||||| || Sbjct 6968627 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 6968568 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 ||||||| || | ||| | ||||| |||| ||||||||||||||| ||||| || |||| Sbjct 6968567 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 6968508 Query 69623 AAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | | ||| ||| || | ||||| | |||||||||||| || ||||| Sbjct 6968507 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 Score = 129 bits (142), Expect = 8e-25 Identities = 234/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| |||||||||||||| |||||| || ||||||||||| ||||||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||| |||||||| | ||||| | || | ||| || | | ||||| ||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 6969153 Query 69236 AATCAAATCGTCCATCTATA------ACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 |||||||| | || || ||||||||||| | || | || |||| ||||| Sbjct 6969152 AATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 6969093 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || || || |||| | | | | ||| || | | |||||||||| |||||||| | Sbjct 6969092 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 6969033 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 | || || || | |||||| ||||| || || ||| || || ||||| ||| Sbjct 6969032 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGATCTTTATAAAGCATAT 6968973 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 | ||||| || ||||||| ||||| | ||||| | |||| Sbjct 6968972 ATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 6968930 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||| | |||| | |||||| |||||||| || || || || ||||| || Sbjct 6969502 ATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCCAAAGCACCATA 6969443 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | |||||| || || | |||| || | |||||||||| ||| || |||||||| Sbjct 6969442 ATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATA 6969383 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | | || |||||||||||| | || |||| |||||||| Sbjct 6969382 ACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 6969338 >seq15 Length=10167229 Score = 152 bits (168), Expect = 7e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 |||||||| ||||||| | ||||||||||||||| | ||||| || || | ||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || ||||| | ||| || || |||||||| ||| || ||||| ||| | | ||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2293435 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || ||||||||| ||| ||||||||||| || ||||| ||||||| |||| Sbjct 2293436 TCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2293495 Query 40067 TCATCGGGTGTCAATTTATTCCAGTCA 40093 ||| || || || |||||||| ||| Sbjct 2293496 TCACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||||| | ||||||||| || ||||||||||||||||||||| || ||| ||| Sbjct 2292664 TTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATATTGACACATA 2292723 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | || ||||||||| ||||| | || ||| |||| || || || | ||| |||| ||| Sbjct 2292724 AGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 2292783 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || | || || ||| | || || ||||| ||| ||| | ||| || | | Sbjct 2292784 ATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCACAAGATGGTTTTTGTACAATG 2292843 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||| |||||||| || || || |||||||||| |||| Sbjct 2292844 TGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2292883 Score = 111 bits (122), Expect = 2e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | || || |||||| ||||| ||||| ||||| | ||||| Sbjct 2292988 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 2293047 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || || |||||| ||| |||||| || ||||||||||| ||||| | Sbjct 2293048 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2293107 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||| | | || || | | | |||| || |||||| || ||||||| || Sbjct 2293108 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2293167 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||| || ||||| |||| |||| ||||||||||| Sbjct 2293168 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAA 2293207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686863111978440