Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq3915 111 1e-19 >seq3915 Length=982 Score = 111 bits (122), Expect = 1e-19 Identities = 316/470 (67%), Gaps = 13/470 (3%) Strand=Plus/Plus Query 105655 ACATATATTGAGCTTAATAACCAATTGAATATCCCTAATAACGGAAAGATTCAGTTAGAC 105714 |||||| || || ||||| || | || |||||||| | | |||||||| ||| | Sbjct 360 ACATATTACGACCTAAATAATGAAATTAACATCCCTAAGGATGATAAGATTCAATTAAAT 419 Query 105715 AAAGATAAAGAAGCTGTTAGAGCATTCTTTTTAGAACATGTA-AACAAGAACACAGTATT 105773 |||||||||||||| || ||| ||| | |||| |||| ||| | | | | Sbjct 420 AAAGATAAAGAAGCGCTTGAAGCCTTCATCAAAGAAAATGTTGAACCTAACCTTAAAAAG 479 Query 105774 TTTCTACTCTTTAGAGGAGAAAATTAG-TTATCTAATTCGAGAAGGAT-ACATTGATAAG 105831 ||| ||| || | || |||||| | || |||||| ||| || ||| || |||| || Sbjct 480 TTTGGT-TCTCTAAAAGA-AAAATTCGATTTTCTAAT-CGATAATGATTACCTTGA--AG 534 Query 105832 ACAGTAATTACTGACAAGTACTCAATGGAATTTATaaaaaaaTTATTTAAGTTCATCTAT 105891 | || | | | |||| || | |||||| ||||| | | | | | | | Sbjct 535 A-AGAATTCATCAACAAATATGACTTTTCATTTATTGAAAAAATCTACGACTACTTGGAA 593 Query 105892 AGTAAAAAGTTCAGATTCGACACATTTATGGGGGCTTACCGTTTCTATAAACAATACGCA 105951 ||| |||| || | ||| | | ||||||| || ||| |||||| |||||||| Sbjct 594 AGTCAAAACTTTAAGTTCAAATCTTTTATGGCTGCATACAAATTCTATGCTCAATACGCC 653 Query 105952 ATGAAAACAGATGATGGGGAACGA-TACCTAGAGCGTTATGAAGATAGAGTAGCGTTTAA 106010 | || || |||||||| ||| | |||||||| | | ||| | || || | || Sbjct 654 CTAAAGACTGATGATGGT-AACTACTACCTAGAACAATTCATCGATCGTGTTGCTATCAA 712 Query 106011 TGCACTCACAATGGGC-GATGGTGACGAAGAGCTTGCTATGAAGATTGCAGATGAGTTAA 106069 ||||| | | | || |||||||| ||||| ||||||||||| | |||||||| | Sbjct 713 CGCACT-ATACTTTGCTGATGGTGATGAAGAACTTGCTATGAACTTAGCAGATGAAATTG 771 Query 106070 TTAACCGTAGATACCAACCTGCAACCCCTACTTTTTTAAATGCAGGTAGA 106119 || ||| ||||||||||| || |||||| |||| ||||||| || ||| Sbjct 772 TTCACCAAAGATACCAACCAGCCACCCCTTCTTTCCTAAATGCCGGAAGA 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465498636462480