Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq101 159 3e-34 seq15 132 4e-26 seq8 131 1e-25 >seq101 Length=89335 Score = 159 bits (176), Expect = 3e-34 Identities = 225/315 (71%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| || | || | ||| |||||| |||||| |||||| ||| ||| || Sbjct 11861 CCAGATTGGGATTTTCAAAAAATGGGAATTGGTGGATTGGATAAAGAATTTACTGCTATT 11920 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 ||||| ||||| |||| || || |||||| | |||| | ||| |||||| || ||| Sbjct 11921 TTTCGAAGAGCCTTTGCATCACGAGTTTTTCCACCAGAGATTGTTACACAATTAGGTTGT 11980 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||| |||| |||||||| ||||| || |||||||||||||| || Sbjct 11981 AAACATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACATTAATGGCT 12040 Query 19396 AGAGAACT---TAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 ||| || | | || ||| | | | | ||||| ||||| || ||||| ||| || Sbjct 12041 AGACAAATAGGAACTATGTTAAATGCTAGAGAACCT---AAAATCGTTAATGGCCCTCAA 12097 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || |||||||||| || || |||| ||| | || | || |||||||| ||| Sbjct 12098 ATTTTGGATAAATATGTTGGAGAAAGTGAAGCCAATATTAGAAGATTATTTGCTGATGCT 12157 Query 19513 GAAGAAGAACAAAAA 19527 ||||| ||| | ||| Sbjct 12158 GAAGAGGAAGAGAAA 12172 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| ||||| |||||||| |||||| | || ||||| | || ||||| | ||| | Sbjct 12334 GGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGATGGTGTAGAACAATTA 12393 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 ||||||||| | |||||||| ||||||||| || || | ||||| ||||||||| Sbjct 12394 AATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGATAGATGAAGCCTTATTA 12453 Query 19732 CGACCCGGTCGGTTGGA 19748 ||||| ||| | || || Sbjct 12454 CGACCTGGTAGATTAGA 12470 >seq15 Length=10167229 Score = 132 bits (146), Expect = 4e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||||||||||||||||| || || || |||||||| || || || || || ||| Sbjct 2293497 GAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCTTCTGATGGAATTGTTAAT 2293438 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | ||| || ||| |||||||| ||| || |||| ||||| ||||| ||| Sbjct 2293437 GAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTCTAT 2293378 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || |||||| ||||||| |||||| ||||||| |||||||| | | | || ||||| Sbjct 2293377 GGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTATTCTTTGTTAATTGATACA 2293318 Query 44009 TACATCAAAGATG 44021 ||||| ||||| Sbjct 2293317 TACATTGCAGATG 2293305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| ||| ||||| || ||||| ||||| | | ||| || ||||||||||| Sbjct 2293717 AGAAAATCCACGTAGATTTGTTGTTTTTCCTATTCAGTGGCCTGATATTTGGCAAATGTA 2293658 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 |||||||| | || || |||||||||| ||||||||| ||| | |||||| Sbjct 2293657 TAAAAAAGCTGAAGCATCTTTTTGGACAGTAGAAGAAGTGGATCTTTCTAAAG 2293605 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| ||||||||||| |||||| ||||||| || ||||| || |||||||| ||||||| Sbjct 2292578 AAAATCCGTTTGATTTCATGGAACATATTTCTTTAGAAGGTAAGACAAACTTCTTTGAAA 2292519 Query 44553 AACGCGTTGGAGAATATCA 44571 || || ||||||||||| Sbjct 2292518 AAAAAGTGGGAGAATATCA 2292500 >seq8 Length=13546544 Score = 131 bits (144), Expect = 1e-25 Identities = 185/255 (73%), Gaps = 10/255 (4%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || ||||||||||| | ||||||||||| | | || ||| |||||||| Sbjct 1794290 TTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATGG 1794349 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGA-GTGCACATTTGGAA 40810 ||||| ||||| | || ||||| ||||||||| |||| |||| || || |||||| | Sbjct 1794350 TTTATTAAAGGATCCACAAATGCAAAGAAATTAAGTGAAA-AGGATGTTCATATTTGGGA 1794408 Query 40811 TGCGCACAGTTC----TAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAG 40866 ||| | ||||| || | || | ||| | || || |||||| || |||| Sbjct 1794409 TGCAAATAGTTCACGTGAATTCTTAGAT-TCTTG---TGGTTTTATAGATAGAGAAGAAG 1794464 Query 40867 GTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTA 40926 | ||| | |||||| ||||||||||||| | | |||||||||| |||| |||| | || Sbjct 1794465 GAGATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATA 1794524 Query 40927 TGTACTCTGATTATA 40941 ||||| ||||||| Sbjct 1794525 TGTACAAAGATTATA 1794539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397430225102605