Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 7e-12 >seq6 Length=18472937 Score = 86.0 bits (94), Expect = 7e-12 Identities = 232/350 (66%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 104882 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTAC 104941 ||| | |||| ||||||||| | |||||| || || || || ||||| |||||||| Sbjct 6968924 GATTTATGGACAGCTATTCTTATTTCTCAAGTTGAAACAGGAACTCCATATATGCTTTAT 6968983 Query 104942 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAT 105001 ||||| ||| || | || ||||| | ||| | || || |||||| ||| Sbjct 6968984 AAAGATCACTGCAATCGCAAATCAAATCATCAAAATATAGGAACAATAAAGAGTAGTAAT 6969043 Query 105002 CTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGC 105060 | ||||||||| | || | | || ||| | | ||||| ||||||||||| | || Sbjct 6969044 TTATGTACAGAAGTTGTGCAGTATTCCAGTCCA-GATGAAGTTGCTGTGTGTAATTTAGC 6969102 Query 105061 ATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACT 105120 ||||| ||| | | || ||| |||| | | |||||||||| | ||||||| Sbjct 6969103 TTCAATTGCTGTTAATATGTTTGTAAATCCCATTAATCAAACATTTGATTTTCAAAAACT 6969162 Query 105121 CCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTA 105180 | |||| || |||| ||| || || || ||| | |||| ||| |||| ||| Sbjct 6969163 TCTGAAAGTAACAAAAATTGTTACTTGTAATCTGGACAAAATTATCGATGTCAATTATTA 6969222 Query 105181 CCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 ||| || ||| || | ||||| ||| | ||||| | || || ||| Sbjct 6969223 TCCCATTCCAGA-AGCAAGAAAATCAAATTTTAGACATAGACCTATAGGT 6969271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583222005866040