Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq8 123 2e-23 >seq8 Length=13546544 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 112063 TATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCT 112122 |||||||| ||| | ||||||||||| |||||||||||||| || | |||||| || Sbjct 1794516 TATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTTCT 1794457 Query 112123 GTATCTGGAAATTGCTCTCTATTC-AACAAATCACTTCTAATATGAGGATTCCAAATCTT 112181 ||||| ||| | | | || || || |||| | | ||| | || |||||| | Sbjct 1794456 CTATCTATAAA-ACCACAAGAATCTAAGAATTCACGTGAACTATTTGCATCCCAAATATG 1794398 Query 112182 CAC-TCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATT 112240 || |||||| | ||| | ||||||||||||||||| |||||||||||| ||||| Sbjct 1794397 AACATCCTTTTCA-CTTAATTTCTTTGCATTTGTGGATCCTTTAATAAACCATAACAATT 1794339 Query 112241 CTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 | ||||| || |||||||| | || | ||| ||||||| | |||||| Sbjct 1794338 CCTCCACTACACCTTTCCAAAATACGCGTTTTGTAGTTAATAATGGAAA 1794290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391920182450323