Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 >seq1 Length=29893408 Score = 170 bits (188), Expect = 2e-37 Identities = 286/408 (70%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 89005 aaaaTATTAATAGGTGTCACTGGCAGTGTTGCTACTATTAAATTACCGGAGTTGCTAGAT 89064 || || || || ||| ||||| |||||||| || ||||||||||| | || ||||| Sbjct 7176373 AAGATTTTGATTGGTTGTACTGGTAGTGTTGCAACAATTAAATTACCACAATTAGTAGAT 7176314 Query 89065 AAATTATTAGGACTAGGTAATATTGAAATACGTATAGTAGCCACGAAAAACGCTACTCAT 89124 ||||||| || || |||| ||||| | | ||||||| || |||| |||| ||| Sbjct 7176313 AAATTAT--GGCGTAA-TAATTTTGAAGTGAGAATAGTAGTTACTGAAAAAGCTAAGCAT 7176257 Query 89125 TTCT---ATGATCAAAAAATAT----AATAATGCCTATTTACACCGATTCAGACGAATGG 89177 |||| | || | || | | ||| | ||| | ||| ||| |||||| Sbjct 7176256 TTCTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGTGGAATGG 7176197 Query 89178 TTTACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAG-GAGGTGGGCTGA 89236 | | ||| |||| |||||||| |||||||| || |||| || ||||| || Sbjct 7176196 GCTGCTTGGCAAGACAGGGGTGATCCTGTATTGCATATTGAT-TTAGTGAAATGGGCCGA 7176138 Query 89237 TATATTTATTATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGGTATATG 89296 | ||||| | || || ||| || ||||||||||| | || ||||||| ||||||||| Sbjct 7176137 TTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGCAAAATAGCTAGTGGTATATG 7176078 Query 89297 CGACAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCAAAGCCCCTTATTTTTTG 89356 || || || |||||| | | | | || |||||| || |||||| | | ||||| Sbjct 7176077 TGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGGTCTTTTG 7176018 Query 89357 TCCTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACA 89404 ||||||||||||||| |||||||||||||||| |||||| | |||| Sbjct 7176017 TCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCAACACA 7175970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603140680937040