Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 145 5e-30 seq6 114 8e-21 >seq1 Length=29893408 Score = 145 bits (160), Expect = 5e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | |||||| ||||| || || |||||||| || |||||||||||| Sbjct 27605207 CCTCCTCTAAGTCTCAACACTAAATGAAGTGTAGATTCCTTTTGGATATTATAATCTGAA 27605266 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | |||||||||||||| || ||||| |||||||| ||||| || || || Sbjct 27605267 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 27605326 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | ||| || || ||| ||||| |||| ||||||||| ||| || || Sbjct 27605327 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCT-TCAAC 27605385 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||| | ||| || ||||| || ||||| || || ||||| |||||||| || || Sbjct 27605386 TTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTTTAT 27605439 Score = 132 bits (146), Expect = 3e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | |||||| || || || ||| || || |||||||||||||||||| Sbjct 27604523 CCCCCTCGAAGTCTCAACACTAAGTGAAGTGTGGATTCTTTCTGAATGTTATAATCTGAA 27604582 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||||||||| ||||| |||||||| ||||| || || || Sbjct 27604583 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGA 27604642 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || |||||| ||| || | |||||| | ||||| ||| ||| || | Sbjct 27604643 ATTCCTTCTTTGTCT-TGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCT-TCAA 27604700 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || |||||||| || | ||||| ||||| || ||||| Sbjct 27604701 CTTCTAAGGTAATGGTTTTACCAGTGAGAGTTTTGACAAAGATTTGCAT 27604749 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | |||||| |||||||| || |||||||| || ||||||||||| Sbjct 27604751 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 27604810 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| ||||||||||| ||||| || || || || || || || || Sbjct 27604811 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAGCGTTGCTGATCAGGGGGA 27604870 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | ||| || |||||| ||||| |||| | ||||||||| ||| || || Sbjct 27604871 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCT-TCAAC 27604929 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | ||||| |||||||| ||||| Sbjct 27604930 TTCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 27604977 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| |||||||| ||||| || || ||||| || |||||||| Sbjct 27602095 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 27602154 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | |||||||||||||| || ||||| |||||||| ||||| || || || Sbjct 27602155 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGA 27602214 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCA 34657 | ||| || |||||| ||| || | || ||| | ||||| | | ||| || | Sbjct 27602215 ATTCCTTCTTTGTCT-TGAATCTTAGCCTTTACGTTCTCTATTGTATCCGAAGCT-TCAA 27602272 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || ||||| || |||| ||||| ||||| || ||||| Sbjct 27602273 CCTCAAGAGTGATAGTTTTTCCAGTTAGAGTTTTGACAAAGATTTGCAT 27602321 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | || |||| ||| ||||| || || ||||| || |||||||| Sbjct 27601867 CCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGAG 27601926 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | ||||||||| ||||| |||||||| ||||| || || || Sbjct 27601927 AGTGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGAGGA 27601986 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | ||| || |||||| ||||| |||| || | ||||| || ||| || | Sbjct 27601987 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTA-CGTTCTCTATTGTATCCGAAGCT-TCAA 27602044 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | ||||| |||||||||||||| Sbjct 27602045 CTTCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATCTGCAT 27602093 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| |||| ||| ||||| || || ||||| ||||||||||| Sbjct 27604979 CCTCCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 27605038 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | |||||||| ||||| || ||||| || || || || || || || || Sbjct 27605039 AGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 27605098 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || || ||| ||| || | |||||| | ||||||||| ||| || | Sbjct 27605099 ATTCCTTCTTTATCT-TGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCT-TCAA 27605156 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || || || || | ||||| ||||| || ||||| Sbjct 27605157 CTTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 27605205 >seq6 Length=18472937 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | |||||| || ||||| || || || |||||||| || ||||| ||| Sbjct 4826332 CCTCCTCGCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTGTAATCCGAA 4826273 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| ||||||||||| ||||| || || | ||| || || || || Sbjct 4826272 AGTGTACGACCATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGG 4826213 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||| ||| ||| ||| |||||||| | ||| || || ||| || | Sbjct 4826212 ATACCCTCCTTATCT-TGAATTTTAGTTTTAACATTTTCAATAGTATCGGATGCT-TCAA 4826155 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| ||||| | ||||| || ||||| ||||| Sbjct 4826154 CCTCCAAAGTGATGGTTTTTCCGGTAAGAGTTTTGACGAAAATTTGCAT 4826106 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| || || || |||||||| || ||||| ||| Sbjct 4825192 CCACCGCGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 4825133 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||||||||||||||| ||||| | |||||| || || || Sbjct 4825132 AGAGTACGACCATCTTCCAGTTGTTTACCGGCAAAGATTAATCTCTGTTGATCAGGAGGA 4825073 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | || || || || ||| ||| | |||||| | ||| || ||| ||| || | Sbjct 4825072 ATACCTTCTTTATC-CTGAATTTTGGCTTTAACATTTTCAATAGTATCTGAAGCT-TCAA 4825015 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | ||||| |||||||| ||||| Sbjct 4825014 CTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824966 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| || || || |||||||| || ||||| ||| Sbjct 4824964 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 4824905 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || |||||||||||||| || || | |||||| || || || Sbjct 4824904 AGAGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGA 4824845 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | || || || || ||| ||| | |||||| | ||| || ||| ||| || | Sbjct 4824844 ATACCTTCTTTATC-CTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCT-TCAA 4824787 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | ||||| |||||||| ||||| Sbjct 4824786 CTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 4824738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| || || ||| |||||||| || ||||| ||| Sbjct 4826560 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGACTCTTTTTGAATATTGTAATCGGAA 4826501 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||||||||| ||||| ||||| | |||||| || || || Sbjct 4826500 AGAGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGGGGA 4826441 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||| | ||| || | ||| || || ||| || | Sbjct 4826440 ATACCTTCTTTGTCT-TGAATTTTGGCTTTCACATTTTCAATGGTATCGGAAGCT-TCTA 4826383 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || || || | ||||| || ||||| ||||| Sbjct 4826382 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 4826334 Score = 91.5 bits (100), Expect = 9e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||| |||||||| ||||| || || | ||||| ||||||||||||||||| Sbjct 4825612 TCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCCAGTTGTTTACCGGCAAAG 4825553 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | |||||| || || || | || || || || ||| ||| | |||||| Sbjct 4825552 ATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTATC-CTGAATTTTGGCTTTAACATT 4825494 Query 34635 TAAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || ||| ||| || ||||| | || || || || || || | ||||| | Sbjct 4825493 TTCAATGGTATCTGAAGCT-TCAACTTCGAGAGTAATAGTCTTTCCTGTAAGGGTTTTGA 4825435 Query 34694 CAAAAATCTGCAT 34706 | ||||| ||||| Sbjct 4825434 CGAAAATTTGCAT 4825422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314709189883793