Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_028888.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq3308 122 2e-23 >seq3308 Length=1005 Score = 122 bits (134), Expect = 2e-23 Identities = 407/620 (66%), Gaps = 20/620 (3%) Strand=Plus/Minus Query 26301 GATTGTTTTTATACCTTTCAATCATCATGTTTAGCATCTGATTCCAAACAAAACGGTTAT 26360 |||| |||| ||| | || ||||||||||||| | ||||||||||| ||||| | || Sbjct 849 GATTATTTTCATATCGTTGCATCATCATGTTTAAAAATTGATTCCAAACGAAACGTTCAT 790 Query 26361 AACCAAAGTTCAGCTTAATTTTCAACTGCTGCTCTTGATTAGGATATATTCGAACTTTAA 26420 |||||| | | || | | || || || | ||| ||||| || | || || Sbjct 789 TACCAAACATTTGATTTAATAGCATTTGTTGTTTGATATTCGGATACATCTTGATTTGAA 730 Query 26421 TGCCTT---TTAGTGTCACCTTATTTCACCTCTTTTCAATACTTAGTATATCACATATGA 26477 | |||| ||| | ||| |||| |||||||||||| ||| || ||| |||||| Sbjct 729 TTCCTTGGTTTACTTTCAT-TTATATCACCTCTTTTCGTTACATATATTATAACATATAT 671 Query 26478 TATACTAAAGTTAATTAAAAATACTACT--AAAT--TAACGAATTGAGGTAATCATATGA 26533 || | |||| || | | |||| || | |||| ||||||| ||| | | | ||| Sbjct 670 TA-ATTAAA--TATGTTATAATA-TAGTTAAAATAATAACGAAAAGAGTGAGTTAGATG- 616 Query 26534 TTAAGCATGAAC-GCACAAATGTATACGATTTTAATTTCCATCTAGTCTGGGTTACAAAG 26592 |||| | ||| | | |||||| ||||| ||||| ||| |||| | ||||| || Sbjct 615 TTAATTAAAAACCGTAGTTGTGTATATGATTTCAATTTTCATTTAGTATTTGTTACTAAA 556 Query 26593 TACCGAAAACAGATTTTTACCACTGGAGAGCGAGCTGAGGCTATGAAGAACATTTTGAGG 26652 || || || ||||| | || | || | ||| |||||| |||||| | | Sbjct 555 TATCGTAAGTCTATTTTCAATACGGATGAAAAACGTGAAAATATGAAATCCATTTTAATG 496 Query 26653 GGTATTGCAAAAAGAAATTCGGTTGAAATATCTAATATGGAAGTGATGCCTGACCACATT 26712 |||| | |||| ||| ||| ||| | ||||| | |||||| | Sbjct 495 TCAATTGGTATTCAAAATAACGTTACAATTAGTAACTTAGAAGTTACCGAGGACCACGTG 436 Query 26713 CATATGATGATTAGCTTCCCACCCAAGTATGCTCCATCCTCAATTGTTAAAGCCTTTAAG 26772 | ||| | ||||| || ||| || |||| || | || |||||| | ||||| Sbjct 435 CGCATGTTAATTAGTTTTAAACCTAAACATGCACCTGCTAGTATCGTTAAATCATTTAAA 376 Query 26773 GG--CG-GTTCGGCAAAACAGTGGTTTATCCAATTCCCTCAAACCAAGAAGTTACTCTGG 26829 || || || || || ||||| | |||| || |||| || ||| ||| ||| Sbjct 375 GGTACGAGTGCGCGTGAA---TGGTTCAAACAATATCCCGAAACAAAAAAGCAACTATGG 319 Query 26830 GGCGGTCATTTATGGTCTCCGAGTTTCTTTATGAGTACCCTAGGGAATGTTTCAAAGGAG 26889 | |||||| ||||||| || |||| |||||||||||| | || ||||||||| || | Sbjct 318 CGTGGTCATCTATGGTCACCTAGTTACTTTATGAGTACGATTGGCAATGTTTCAGAGAAA 259 Query 26890 ATTGTAGCTCAATATGTTGA 26909 ||||| ||||||| |||| Sbjct 258 ATTGTTAATCAATATATTGA 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126187226119672