Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq3431 82.4 3e-11 >seq3431 Length=1311 Score = 82.4 bits (90), Expect = 3e-11 Identities = 199/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Minus Query 55677 ATGTGTGGCTGACCCGCAAGGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTC 55736 ||||| | | ||||||||||| ||| | |||| | |||| |||| ||| | || | Sbjct 1008 ATGTGCTGGTCACCCGCAAGGGGGCGGTGCGCGCGGCCAAGGGCGTGCTGGGGATCATCC 949 Query 55737 CGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGT 55796 |||| || |||||| || |||| ||||| ||| || || || || |||| Sbjct 948 CGGGTTCCATGGGCGCCAAGTCGTTCATCGTGCGCGGGCTCGGCAACCCGGACTCGTTCG 889 Query 55797 GCTCAGC-GCCGC-ACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTT 55854 | ||| || || |||| ||||| ||| | | || ||||| ||| |||||| | Sbjct 888 AC--AGCTGCAGCCACGGCGCGGGGCGCGTGATGTCCCGCACCGCGGCCAAGAAGCTGGT 831 Query 55855 CACGGTCGACGACC---TCGAGG-CGCGTATGCAGGGCATCGAGTACCGCAAGGGCGA-G 55909 ||| ||||||| | ||| | | || || |||| ||| | |||||||| ||| | Sbjct 830 GACGCTCGACGAGCATATCGCCGACACG---GC-GGGCGTCGCCTGCCGCAAGGACGAAG 775 Query 55910 GCGTGGGTCGACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATG 55960 ||||| ||||||||| ||| || || ||||||||||| | ||||||| Sbjct 774 GCGTGA-TCGACGAGACGCCCAGGGCCTATAAGCCGATCGAAGCCGTGATG 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193814952664942