Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=18472937 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||||||||| || || |||||| |||| || ||| | Sbjct 4826333 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAAGCTTC 4826392 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| ||||| |||||||||||| |||| || Sbjct 4826393 CGATACCATTGAAAAT--GTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCCCCTGAT 4826450 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | ||||| ||||| || |||||| |||| || | || | | ||||||||| Sbjct 4826451 CAACAGAGATTAATCTTTGCTGGTAAACAACTGGAGGATGGTCGTACTCTTTCCGATTAC 4826510 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||||||| || | ||| | |||||||| | ||||| || Sbjct 4826511 AATATTCAAAAAGAGTCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 4826560 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| ||||| || ||| |||||| |||| || ||| | Sbjct 4825194 ATGCAAATTTTCGTCAAAACCCTTACAGGAAAAACTATTACTCTTGAAGTAGAAGCTTCT 4825253 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| || || |||||||||||| |||| || | Sbjct 4825254 GATACCATTGAAAAT--GTAAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCTGACC 4825311 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || || ||||| ||||||||||| || || | || | | |||||||||| Sbjct 4825312 AACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACA 4825371 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||||||| || | ||| | |||||||| | ||||| || Sbjct 4825372 ATATTCAAAAAGAGTCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 4825420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| || ||||| ||| |||||| | || || ||| | Sbjct 4824965 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4825024 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| || ||||||||| |||| || Sbjct 4825025 AGATACTATTGAAAAT--GTTAAAGCCAAAATTCAGGATAAAGAAGGTATTCCTCCTGAT 4825082 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | ||||| |||||||| |||||| |||| || | || | | ||||||||| Sbjct 4825083 CAACAGAGATTAATCTTTGCCGGTAAACAACTGGAAGATGGTCGTACTCTTTCCGATTAC 4825142 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || || |||||||| || | ||| | |||||||| Sbjct 4825143 AATATTCAAAAAGAATCTACACTTCATCTTGTTTTGCG 4825180 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| || ||||| ||| |||||| | || || ||| | Sbjct 4824737 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 4824796 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| || ||||||||| |||| || Sbjct 4824797 AGATACTATTGAAAAT--GTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGAT 4824854 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | || || |||||||| ||||| |||| || | || | | ||||||||| Sbjct 4824855 CAACAGAGATTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTAC 4824914 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| || | ||| | |||||||| | ||||| || Sbjct 4824915 AATATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 4824964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA- 27847 |||||||||||| || ||||||||||| || ||| || || | || || ||| ||| Sbjct 4826105 AATGCAAATTTTCGTCAAAACTCTTACCGGAAAAACCATCACTTTGGAGGTTGAA-GCAT 4826163 Query 27848 CCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 |||| | || | ||| || ||| ||||| || || || ||| | || || Sbjct 4826164 CCGATACTATTGAAAAT--GTTAAAACTAAAATTCAAGATAAGGAGGGTATCCCTCCAGA 4826221 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| | || |||||||| || |||||| |||| || | || | | || ||||| Sbjct 4826222 TCAGCAGAGATTGATTTTTGCTGGTAAACAACTGGAAGATGGTCGTACACTTTCGGATTA 4826281 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| || |||||||| || | ||||| || ||||||||||| || || Sbjct 4826282 CAATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGCGAGGAGG 4826332 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| || || ||| |||||| |||| || ||| | Sbjct 4826562 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCT 4826621 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| |||||| |||||||||||| |||| || | Sbjct 4826622 GACACAATTGAAAAT--GTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATC 4826679 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || |||||||| || ||||| |||| || | || | | |||||||| | Sbjct 4826680 AACAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCCGATTATA 4826739 Query 27968 ACATCCAAAAAGA 27980 | || |||||||| Sbjct 4826740 ATATTCAAAAAGA 4826752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355839322434567