Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq1 86.0 5e-12 >seq6 Length=18472937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || || || || ||||||| || ||||||| Sbjct 4826119 ACGAAAATTTG--CATTCCACCTCTCAAACGCAATACTAAATGTAATGTTGATTCTTTTT 4826062 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | |||||| || | || || |||||||| || ||||| || | | Sbjct 4826061 GAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATC 4826002 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGC-GTCGCCACC 39219 |||||| || | || | | ||| || | | ||| ||| |||| | | | | | Sbjct 4826001 TCTGCTGATCTGGAGGAATACCCTCCTTAT-CTTGAATTTTAGTTTTAACATTTTCGATA 4825943 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 |||||| | || || |||| ||||| ||||||| || || || ||||| || ||| Sbjct 4825942 GTATCGGATGCTTCAACCTCCAAAGTGATGGTTTTTCCGGTAAGAGTCTTAACGAAAATT 4825883 Query 39280 TGCAT 39284 ||||| Sbjct 4825882 TGCAT 4825878 Score = 82.4 bits (90), Expect = 7e-11 Identities = 165/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || |||||||| |||| || |||||||| || |||||||| Sbjct 4824751 ACAAAAATTTG--CATTCCACCTCTTAAACGTAGTACTAAATGTAGTGTTGACTCTTTTT 4824694 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | | ||| || | || || | ||||| || ||||| || | | Sbjct 4824693 GAATATTATAATCAGATAATGTACGCCCATCTTCTAATTGTTTACCAGCAAAGATCAATC 4824634 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||| || | || | | || ||||| |||||| ||| | | | | | Sbjct 4824633 TTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGG 4824574 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | ||| || |||| || || |||| || |||| ||||| |||||||| | Sbjct 4824573 TATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCT 4824514 Query 39281 GCAT 39284 |||| Sbjct 4824513 GCAT 4824510 >seq1 Length=29893408 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||||| | | ||| |||| ||| || || ||||| | Sbjct 27602536 ACAAAAATTTG--CATTCCTCCTCGAAGTCTTAATACCAGATGAAGAGTAGATTCTTTCT 27602593 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| ||||| | ||||||| | | || ||||||||||| || ||||| || | || Sbjct 27602594 GAATATTGTAATCTGAGAGTGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAAAC 27602653 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | || || || | || | | |||||||| || || ||| | || | | | Sbjct 27602654 GTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTTACGTTCTCTATTG 27602713 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | || || || | |||||| |||| || || || ||||||||||| |||| Sbjct 27602714 TATCTGAAGCTTCAACTTCAAGAGTGATAGTTTTCCCAGTAAGAGTTTTAACAAAAATTT 27602773 Query 39281 GCAT 39284 |||| Sbjct 27602774 GCAT 27602777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429517744102073