Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 1e-12 >seq6 Length=18472937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||||||||||||||||||||||| | ||| |||||||| |||||| || Sbjct 4825162 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGTTGTTTACCG 4825103 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||||| || || | |||||||| || |||||| ||| Sbjct 4825102 GCAAAGATTAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTGGCTTTA 4825043 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | || |||| | ||| | ||||||||||| || || | |||| Sbjct 4825042 ACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTT 4824983 Query 101222 TTAATAAAAATTTGCATT 101239 || | ||||||||||||| Sbjct 4824982 TTGACAAAAATTTGCATT 4824965 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||||||||||||||||||||||| | ||| |||||||| ||||| || Sbjct 4824934 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAGCTGTTTACCG 4824875 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||||| || || | |||||||| || |||||| ||| Sbjct 4824874 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTA 4824815 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | || |||| | ||| | ||||||||||| || || | |||| Sbjct 4824814 ACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTT 4824755 Query 101222 TTAATAAAAATTTGCATT 101239 || | ||||||||||||| Sbjct 4824754 TTGACAAAAATTTGCATT 4824737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409634233625139