Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 >seq15 Length=10167229 Score = 109 bits (120), Expect = 5e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 ||||||||| ||||| | |||||| || |||| ||||| || || || || | || || Sbjct 2293336 ATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTC 2293395 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 ||||| ||| ||||| | || ||||| ||| || | || || || || || || ||| Sbjct 2293396 TGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTAACAATTCCATCAGA 2293455 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 ||||||||||| || || |||||||||||||| Sbjct 2293456 AGCTGCAAAAAATGCTAAGACATGAGATATAAA 2293488 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 4369 CTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTC 4428 |||||||||||| || || |||||||| ||||| || | ||| |||| || || || | Sbjct 2292680 CTACAAGCAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAATTCATGC 2292739 Query 4429 CAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTG 4488 | || | | ||||||| || | ||||||||| |||||||| || | || || ||| Sbjct 2292740 CTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCAATTTTGACAGCATCTT 2292799 Query 4489 TGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAAC 4548 | || || | | | | || ||||||||| | ||| | || | |||| ||||| Sbjct 2292800 TAATAATTGATGTGACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAAC 2292859 Query 4549 ACGCAAAATCACAATGCAAACC 4570 | |||||||||||||| || || Sbjct 2292860 ATGCAAAATCACAATGTAATCC 2292881 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||||| | ||| |||||||| || |||||||| || ||||| |||||||| ||||| Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 |||||||||||| ||||||| |||| | |||||||| Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCT 2293704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427021905966893