Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 183 4e-41 seq15 158 2e-33 >seq6 Length=18472937 Score = 183 bits (202), Expect = 4e-41 Identities = 226/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089 ||| || || ||| || || ||||||| ||| || ||||| |||| ||| | | || Sbjct 6969920 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 6969861 Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149 || |||||| ||| | | ||||||||| || | |||||| ||||| || | ||||| Sbjct 6969860 TTCAGTTAAATCTCGCAATAAATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCT 6969801 Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209 | ||||||||||| ||||| |||||||| | ||||||||| ||||| |||||||| || Sbjct 6969800 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 6969741 Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269 || || || |||||||||||||| | || ||| |||||| | |||||| | || Sbjct 6969740 TGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 6969681 Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329 ||| | ||| | | |||||||||| | || | || | ||||| ||| | ||| || Sbjct 6969680 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCATA 6969621 Query 77330 TTGTAGAAT 77338 ||||| ||| Sbjct 6969620 TTGTAAAAT 6969612 Score = 149 bits (164), Expect = 9e-31 Identities = 249/358 (70%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||||||||| ||| || || | ||||||||||| ||||||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || |||||||| | ||||| | | ||| | ||| || | | ||||| ||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 6969153 Query 77644 AATCAAATCTTCCATCTA------TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||||||| || || | | |||||||| || | ||| || || |||| ||||| Sbjct 6969152 AATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 6969093 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || |||| | ||| ||| || | | || ||||||| |||||||| | Sbjct 6969092 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 6969033 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATA 77816 | || || || | |||||| || || || |||||| ||| || |||||||| ||| Sbjct 6969032 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGA-TCTTTATAAAGCATA 6968974 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 | ||||| || ||||||| || || | ||||| | |||| | ||||||||| Sbjct 6968973 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 6968916 Score = 134 bits (148), Expect = 2e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || ||||||||||| |||||||||||| |||| ||||| |||||| ||| Sbjct 6968625 GTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTGGA 6968566 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || | ||| | ||| ||| ||||||||||||||| ||||||||||||||| Sbjct 6968565 CACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 6968506 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 | |||| |||| |||| | ||||| |||||| || ||||| Sbjct 6968505 AAAGCATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 >seq15 Length=10167229 Score = 158 bits (174), Expect = 2e-33 Identities = 169/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 48396 TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 |||| |||| || ||| ||||| ||||| | | ||||||||| || |||| |||||| Sbjct 2293302 TTGC-ATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCC 2293360 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAAT 48515 || || | ||||| || || ||||| | || ||||| || ||||| || || |||| Sbjct 2293361 ATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAAT 2293420 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 |||||| | | ||||||||| || ||||||||| ||| |||||||||||||| ||||| Sbjct 2293421 CGTTCAACAAGATTCTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGA 2293480 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 ||||||| |||||| ||| ||| | |||||||| ||| Sbjct 2293481 GATATAAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 134 bits (148), Expect = 2e-26 Identities = 167/225 (74%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996 ||| ||| |||||| | ||||||||| || || |||||||||||| ||||| |||||| Sbjct 2292655 TTACAAACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATAT 2292714 Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056 ||| | || ||||||||| ||||| | || ||| |||| || || || | ||| Sbjct 2292715 TGACACATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 2292774 Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCACTTGGTGG 48115 |||||||| || |||||||||| || || ||||| || ||| |||| | ||| Sbjct 2292775 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGT----TCACAAGATGG 2292830 Query 48116 --ATACAACAA-ATGTTTAAACATTAAACATGCAAAATCACAATG 48157 | |||| ||||| |||||||||||||||||||||||||| Sbjct 2292831 TTTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 2292875 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| || | ||| |||||||| |||||||||| ||||| || |||||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||| |||||| | || || || |||| |||||||||| |||||||| Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTTT 2293715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694622595841440