Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 190 3e-43 seq15 161 1e-34 >seq6 Length=18472937 Score = 190 bits (210), Expect = 3e-43 Identities = 215/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 75646 TATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAG 75705 ||||||| ||| || || || |||| ||| | | ||| || |||||| ||| | | Sbjct 6969899 TATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTTAAATCTCGCAATAA 6969840 Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| |||| |||||| ||||| || | ||||||| ||||||||||| ||||| Sbjct 6969839 ATGAGGATTTACAACTTGAAACTCTCCTGATAGAACTCTTCTTGTGTAAATATTGCTGGT 6969780 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 |||||||| | ||||||||| ||||| |||||||| || ||||| || || |||||||| Sbjct 6969779 GTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCTGTTGATGCTGTTGGCATAGG 6969720 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | || ||| |||||| | |||||| | ||||| | ||| | | |||| Sbjct 6969719 TGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTTTTTCAAAATAGTCCA 6969660 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||||| | || | ||| | ||||| ||| | ||| ||||||| ||| Sbjct 6969659 ATCCCATAAATTAGTTGGAATAACATTCCACATATCATATTGTAAAAT 6969612 Score = 150 bits (166), Expect = 3e-31 Identities = 270/392 (69%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||| |||||||||||||| ||| || || ||||||||||| || |||||||| | Sbjct 6969272 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 6969213 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| |||||||| | ||||| | ||| | ||| || | | ||||| ||| Sbjct 6969212 CATCGATAATTTTGTCCAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 6969153 Query 76239 AATCAAATTTTCCATCTATC------ACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||||||| || || || ||||||||||||| ||| || || |||| ||||| Sbjct 6969152 AATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 6969093 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || |||| | | ||| ||| || | | || || |||| |||||||| || Sbjct 6969092 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 6969033 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACA 76411 | || ||||| | |||||| || || || || || ||| || |||||||| | | Sbjct 6969032 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAGTGA-TCTTTATAAAGCATA 6968974 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 76471 | |||||||| ||||||| || || | ||||| | |||| | ||||||||| Sbjct 6968973 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTTGA 6968914 Query 76472 ATTATAGATTTGTATCGCTTCTCTCTTTCATA 76503 ||| ||| |||| ||||| | ||||| Sbjct 6968913 ATTTGTCGTTTATATCTTTTCTCATTCTCATA 6968882 Score = 132 bits (146), Expect = 7e-26 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 ||||||| | ||||||||||| |||||||||||| ||||||||||| |||||| | Sbjct 6968627 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 6968568 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| || | ||| | ||| ||| ||| ||||||||||| ||||||||||||| Sbjct 6968567 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 6968508 Query 76626 ATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 ||| |||| |||| |||| | |||| |||||| || ||||| Sbjct 6968507 ATAAAGCATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 6968462 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || || || | | |||||| ||||| || || || || || ||||| || Sbjct 6969502 ATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCCAAAGCACCATA 6969443 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | |||||| || || | ||||||| | ||| ||||| ||| ||||| ||||| Sbjct 6969442 ATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATA 6969383 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | | || |||||||||||| || || |||| ||||||||| Sbjct 6969382 ACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 6969338 >seq15 Length=10167229 Score = 161 bits (178), Expect = 1e-34 Identities = 162/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 |||||||| ||||| | | ||||||||||||||||| ||||| || || | ||||| Sbjct 2293316 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2293375 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATT 47018 || || ||||| | ||| || || || ||||| ||| || |||||||||| |||| ||| Sbjct 2293376 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCA-ACAAGATT 2293434 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 |||||| || ||||||||| ||| ||||||||||| || ||||| ||||||| ||| Sbjct 2293435 CTCATTAACAATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTT 2293494 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCA 47106 |||| || ||| | |||||||| ||| Sbjct 2293495 TTCACTGGCAGTTAAATTATTCCAATCA 2293522 Score = 138 bits (152), Expect = 2e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAC 46485 ||| ||| |||||| | ||||||||| || || |||||||||||| ||||| ||||| Sbjct 2292655 TTACAAACCTTTTTACAACCTAATTCTACAAGCAATCTATCTGCAACAAATTCGATATAT 2292714 Query 46486 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAAC 46545 ||| | || ||||||||| ||||| | || || |||| || || || | ||| Sbjct 2292715 TGACACATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 2292774 Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 ||||||||||| |||||||||| || || ||||| ||| ||| | |||| Sbjct 2292775 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCACAAGATGGTTTT 2292834 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATG 46646 || | | ||||| |||||||||||||||||||||||||| Sbjct 2292835 TGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 2292875 Score = 98.7 bits (108), Expect = 1e-15 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | ||| |||||||| ||||||| || || || || |||||||||||||| | Sbjct 2293605 CTTTAGAAAGATCCACTTCTTCTACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 2293664 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGT 47232 ||| |||||| | | || || ||||||| |||||||||| |||||||| || ||| | Sbjct 2293665 GCCAAATATCAGGCCACTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAA-T 2293723 Query 47233 ATAGGTTC 47240 | ||| || Sbjct 2293724 AAAGGCTC 2293731 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||| ||| | || || |||||| || || ||||| || || | |||||| Sbjct 2292990 TCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTTTT 2293049 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || ||||| || ||| ||| |||||| || |||||||| || || || || Sbjct 2293050 AACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 2293109 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA---TCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 || | | || || | ||| |||| || ||||| || ||||||| ||| Sbjct 2293110 ACTACACGTTCAGGAAAAGTAGCACTTTCATGATTTATCCAATTTAACGCCCAATGAGCT 2293169 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 ||||| ||||| |||| |||| ||||||||||| | |||| Sbjct 2293170 TTTTTTGCAACACATGGCAAATTTTCAATAGCATTAAATAAGAAGT 2293215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712886980950720