Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq2395 127 5e-25 >seq2395 Length=1310 Score = 127 bits (140), Expect = 5e-25 Identities = 300/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 539 AATAAATTTAGAGCGTTCGTTGCTGGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTTCA 598 || ||||| || ||||| ||| | |||||||| || ||||||||||| || | || Sbjct 779 AAAAAATTCAGGGCGTTTGTTTCAGGGTTTGGCGGCGGGAAAACATGGGTAGGCGGCTCT 838 Query 599 AGTCTTTGTGATAAGTCTTGGTCTTTCCCTAAAGTTCCGTTGGGTTACTTTGCTCCAACG 658 | || | | ||| ||||||||||| ||||| |||||||| || Sbjct 839 GCAATGTGCGCGCGTTTCTGGCAATTCCCTAAAGTAAACCAAGGTTATTTTGCTCCGACA 898 Query 659 TATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATTGGGGA 718 || |||||||| ||||||| |||||||| || || || || || || | | ||||| Sbjct 899 TACCCGCAGATAAGAGATATTTTTTTCCCCACTATAGAAGAGGTGGCGTCGCAATGGGGG 958 Query 719 TTGAAGACAAAGATCTATGAAT-CTAACAAAGAAGTTGATCTTTACTATGGC--CGCCAA 775 | | | | | || || | || |||| ||||| || ||| |||| | ||| | ||| Sbjct 959 CTCAGGGCTGATAT-TAAGTATGCTAATAAAGAGGTCGATTTTTA-TGAGGCAGGGACAA 1016 Query 776 -----TATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACTATTGTAGGTT 830 ||||| |||||| || ||||| |||||||| ||||| | || ||||| || | Sbjct 1017 ACATTTATCGCGGCACAACAATATGCCGCTCAATGGATAAGCCAGACACAATTGTCGGCT 1076 Query 831 TTAAGATTGGTCATGCGCTGATTGATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAAC 890 |||| || || ||||| || |||||||||| ||| | | | ||| | || || | | Sbjct 1077 TTAAAATCGGGCATGCTTTGGTTGATGAGCTGGATACGCTTAAAAAAGAAAAAGCCCTCC 1136 Query 891 AAGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTGTTGAACGGTA 950 | ||| ||| | || || || |||| ||||| | | || || ||||| | Sbjct 1137 AGATCTGGAATAAAACAATCGCCCGCCTGCGTTATAAGATACCCGGCTTAACAAACGGCA 1196 Query 951 TTGATGTTGCAACAACGCCAGAGGGCTT 978 | ||||| | ||||| |||||||| || Sbjct 1197 TAGATGTAACCACAACACCAGAGGGTTT 1224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130266968317222