Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq101 114 2e-20 seq8 89.7 7e-13 >seq101 Length=89335 Score = 114 bits (126), Expect = 2e-20 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 156272 AGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTT 156331 ||||||||||||||| || || || || || || | || | |||||| | |||||| Sbjct 12040 AGCCATTAATGTTTTTCCTGTTCCTGGTGGACCATAAAGTAAAATTCCTTTCACATGTTT 11981 Query 156332 ACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAA 156391 ||||||||||| | | || ||| |||| || || ||||| ||||||||||| Sbjct 11980 ACAACCTAATTGTGTAACAATCTCTGGTGGAAAAACTCGTGATGCAAAGGCTCTTCGAAA 11921 Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAATTT-- 156449 ||| || |||||||||||||||||| || | ||||||| | ||||| ||||| | Sbjct 11920 AATAGCAGTAAATTCTTTATCCAATCCACCAATTCCCATTTTTTGAAAATCCCAATCTGG 11861 Query 156450 ATAGATATTTGA 156461 || |||| |||| Sbjct 11860 ATTGATAATTGA 11849 >seq8 Length=13546544 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 50619 ATTTTAATGACCGCCTGGAATCCAACCGATATAGATCAAACCGTTTTACCTCCGTGTCAT 50678 ||| ||||||| || |||||||||| ||||| ||| | ||||||||| |||||| Sbjct 1794690 ATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGTCAT 1794749 Query 50679 GTTTTATGTCAATTTTATGCCACAGACAATGTTTTATCCTGTCAATGTTATCAAAGATCA 50738 ||| ||||||||||| | | | | ||||| || ||| |||||||||| Sbjct 1794750 TGTTTCGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTTTATCAAAGAAGT 1794809 Query 50739 GCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAA 50790 || ||||||||| | || || || || || | || ||||| ||||||||| Sbjct 1794810 GCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTATTAA 1794861 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 50300 ATTCCCTCTATTTACGACTaaaaaaaTGTTTTGGCGCGGAATAGCGGAAGAACTTTTATG 50359 ||| || |||| || || ||| | |||||| || ||| ||| ||| | ||||| Sbjct 1794289 ATTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATG 1794348 Query 50360 GTTCCTCGACGGATCTACAAATTCTTTAAAGTTATCGGAGAAGTCCGTTCGTATATGGGA 50419 ||| | | ||||| |||||| | || ||| || ||| |||| ||| ||||| Sbjct 1794349 GTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGTGAAAAGGATGTTCATATTTGGGA 1794408 Query 50420 CGCTCACGGTTCCAGATCAAAT-TTAGATCGTTTAGGATTTAATTACAGAAACAAAGGAG 50478 || | |||| | | || | |||||| || || |||| | ||| | |||||| Sbjct 1794409 TGCAAATAGTTCACG-TGAATTCTTAGATTCTTGTGGTTTTATAGATAGAGAAGAAGGAG 1794467 Query 50479 ATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGC 50521 ||||||| ||| |||| || |||||||||||||||||||| || Sbjct 1794468 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGC 1794510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667030831160760