Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armadillidium_20vulgare_20[genbank_20GCA_5F001887335.1_202016-11-29] 2,096 sequences; 15,703,284 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 181 9e-40 >seq1 Length=2798100 Score = 181 bits (200), Expect = 9e-40 Identities = 285/402 (71%), Gaps = 11/402 (3%) Strand=Plus/Minus Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354 |||| | || || ||||| || ||||||||| | ||||| | ||||| | | ||| Sbjct 658707 TACTACTTGACGTGACTCCACTTTCTCTTGGTATTGAAACTCTAGGAGGAGTATTCACTC 658648 Query 552355 ATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATT 552414 ||||| || | |||||||||||||| ||||||||| | || ||||| || Sbjct 658647 CACTTATTGAACGTAATACTACTATTCCCACTAAAAAATCCCAGGTGTTTTCAACTGCAG 658588 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 |||||||||||| |||||||||||| | | | | || ||||||||||| | | Sbjct 658587 AAGATAATCAAACAGCTGTTACAATTAAGGTGCATCAGGGTGAAAGAAAATTGGCAGTTG 658528 Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTAC 552534 |||| || ||||||| |||| ||||||||| || ||||||||||| |||||||| | Sbjct 658527 ATAACAAGTTACTTGGTCAATTTAGTTTAGAAGGAATACCTCCTGCTCCGCGTGGAGTTC 658468 Query 552535 CGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTG 552594 | ||||||||||| || || ||||| ||||| |||||||| | | || |||| | Sbjct 658467 CACAAATTGAAGTGACATTTGATATAGATGCAAATGGAATAGCGCACGTTTCTGCAAAAG 658408 Query 552595 ATAAATCTA--GCAACAAGAGTA-AAAATA-TTACTNNNNNNNATAATCGTGGTAGATTT 552650 ||||| ||| | || ||||| | |||||| || | | | ||||| || Sbjct 658407 ATAAAGCTACTGGAA-AAGAGCAGAAAATACGTATTCAGTCT--TCA-GGTGGTCTAT-- 658354 Query 552651 ACTGATGAACAAATTAAACGTATGGTCGAAGAAGCTAAAGAA 552692 ||||||| |||| || || ||||| |||||||| ||||| Sbjct 658353 -CTGATGATGAAATAAATCGCATGGTAAAAGAAGCTGAAGAA 658313 Score = 181 bits (200), Expect = 9e-40 Identities = 285/402 (71%), Gaps = 11/402 (3%) Strand=Plus/Plus Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354 |||| | || || ||||| || ||||||||| | ||||| | ||||| | | ||| Sbjct 1783479 TACTACTTGACGTGACTCCACTTTCTCTTGGTATTGAAACTCTAGGAGGAGTATTCACTC 1783538 Query 552355 ATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATT 552414 ||||| || | |||||||||||||| ||||||||| | || ||||| || Sbjct 1783539 CACTTATTGAACGTAATACTACTATTCCCACTAAAAAATCCCAGGTGTTTTCAACTGCAG 1783598 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 |||||||||||| |||||||||||| | | | | || ||||||||||| | | Sbjct 1783599 AAGATAATCAAACAGCTGTTACAATTAAGGTGCATCAGGGTGAAAGAAAATTGGCAGTTG 1783658 Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTAC 552534 |||| || ||||||| |||| ||||||||| || ||||||||||| |||||||| | Sbjct 1783659 ATAACAAGTTACTTGGTCAATTTAGTTTAGAAGGAATACCTCCTGCTCCGCGTGGAGTTC 1783718 Query 552535 CGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTG 552594 | ||||||||||| || || ||||| ||||| |||||||| | | || |||| | Sbjct 1783719 CACAAATTGAAGTGACATTTGATATAGATGCAAATGGAATAGCGCACGTTTCTGCAAAAG 1783778 Query 552595 ATAAATCTA--GCAACAAGAGTA-AAAATA-TTACTNNNNNNNATAATCGTGGTAGATTT 552650 ||||| ||| | || ||||| | |||||| || | | | ||||| || Sbjct 1783779 ATAAAGCTACTGGAA-AAGAGCAGAAAATACGTATTCAGTCT--TCA-GGTGGTCTAT-- 1783832 Query 552651 ACTGATGAACAAATTAAACGTATGGTCGAAGAAGCTAAAGAA 552692 ||||||| |||| || || ||||| |||||||| ||||| Sbjct 1783833 -CTGATGATGAAATAAATCGCATGGTAAAAGAAGCTGAAGAA 1783873 Score = 138 bits (152), Expect = 9e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | |||| |||| | |||| ||||| | ||||| || ||||| Sbjct 659497 AACATGAAAGAGGCAGCAGAAGCTTATCTTGGAGGGGAAGTAAAAGATGCTGTGATAACA 659438 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || |||||||| || ||||| || ||||||||||| || |||||||| ||| |||||| Sbjct 659437 GTGCCAGCATACTTCAATGATTCTCAACGTCAAGCAACAAAAGATGCAGGAAAAATTGCT 659378 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 ||| | ||||| || | || || || ||||| |||||||| |||||||| ||||| ||| Sbjct 659377 GGATTAAATGTGCTCAGGATAATTAACGAACCAACTGCTGCAGCACTTGCTTATGGTCTT 659318 Query 550532 GATAAA 550537 |||||| Sbjct 659317 GATAAA 659312 Score = 138 bits (152), Expect = 9e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | |||| |||| | |||| ||||| | ||||| || ||||| Sbjct 1782689 AACATGAAAGAGGCAGCAGAAGCTTATCTTGGAGGGGAAGTAAAAGATGCTGTGATAACA 1782748 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || |||||||| || ||||| || ||||||||||| || |||||||| ||| |||||| Sbjct 1782749 GTGCCAGCATACTTCAATGATTCTCAACGTCAAGCAACAAAAGATGCAGGAAAAATTGCT 1782808 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 ||| | ||||| || | || || || ||||| |||||||| |||||||| ||||| ||| Sbjct 1782809 GGATTAAATGTGCTCAGGATAATTAACGAACCAACTGCTGCAGCACTTGCTTATGGTCTT 1782868 Query 550532 GATAAA 550537 |||||| Sbjct 1782869 GATAAA 1782874 Score = 111 bits (122), Expect = 1e-18 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||||||||||||| | || ||||| ||||||||||||||||| | | ||||| | || Sbjct 659317 CAAGACCATAAGCAAGTGCTGCAGCAGTTGGTTCGTTAATTATCCTGAGCACATTTAATC 659376 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || |||||| ||||||| || ||||||||||| | |||||| || ||||| || | Sbjct 659377 CAGCAATTTTTCCTGCATCTTTTGTTGCTTGACGTTGAGAATCATTGAAGTATGCTGGCA 659436 Query 361821 CAGTAATCACTGCTTTTTCAACTT 361844 | || ||||| || | || |||| Sbjct 659437 CTGTTATCACAGCATCTTTTACTT 659460 Score = 111 bits (122), Expect = 1e-18 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||||||||||||| | || ||||| ||||||||||||||||| | | ||||| | || Sbjct 1782869 CAAGACCATAAGCAAGTGCTGCAGCAGTTGGTTCGTTAATTATCCTGAGCACATTTAATC 1782810 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || |||||| ||||||| || ||||||||||| | |||||| || ||||| || | Sbjct 1782809 CAGCAATTTTTCCTGCATCTTTTGTTGCTTGACGTTGAGAATCATTGAAGTATGCTGGCA 1782750 Query 361821 CAGTAATCACTGCTTTTTCAACTT 361844 | || ||||| || | || |||| Sbjct 1782749 CTGTTATCACAGCATCTTTTACTT 1782726 Score = 89.7 bits (98), Expect = 4e-12 Identities = 121/168 (72%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 370650 AATGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCT 370709 ||||| | || |||||| || ||||||||||| |||||| ||||| | |||||||| ||| Sbjct 1041396 AATGCTAGTGTTGATGAGATAAAAAAAGCATATAAAAAATTAGCATTAAAATATCACCCT 1041455 Query 370710 GATAGAAACAAAAGTCCT---GATGCTGAAGAAAAGTTTaaaaaaaTTAGCAATGCACAT 370766 |||||||| || | || || || ||||| |||||| || | | |||| || Sbjct 1041456 GATAGAAATCCTGGTAATAAGGAAGCAGAGGAAAAATTTAAAGAAGTAACAGCTGCATAT 1041515 Query 370767 GGTATTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 | |||| || ||| ||||||| | | | ||||||| | | |||| Sbjct 1041516 GAAGTTCTATCCGATTCTGAAAAAAGAGCAGGTTATGATCGTTATGGT 1041563 Score = 89.7 bits (98), Expect = 4e-12 Identities = 121/168 (72%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 370650 AATGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCT 370709 ||||| | || |||||| || ||||||||||| |||||| ||||| | |||||||| ||| Sbjct 1443738 AATGCTAGTGTTGATGAGATAAAAAAAGCATATAAAAAATTAGCATTAAAATATCACCCT 1443797 Query 370710 GATAGAAACAAAAGTCCT---GATGCTGAAGAAAAGTTTaaaaaaaTTAGCAATGCACAT 370766 |||||||| || | || || || ||||| |||||| || | | |||| || Sbjct 1443798 GATAGAAATCCTGGTAATAAGGAAGCAGAGGAAAAATTTAAAGAAGTAACAGCTGCATAT 1443857 Query 370767 GGTATTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 | |||| || ||| ||||||| | | | ||||||| | | |||| Sbjct 1443858 GAAGTTCTATCCGATTCTGAAAAAAGAGCAGGTTATGATCGTTATGGT 1443905 Score = 89.7 bits (98), Expect = 4e-12 Identities = 121/168 (72%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 370650 AATGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCT 370709 ||||| | || |||||| || ||||||||||| |||||| ||||| | |||||||| ||| Sbjct 2003234 AATGCTAGTGTTGATGAGATAAAAAAAGCATATAAAAAATTAGCATTAAAATATCACCCT 2003293 Query 370710 GATAGAAACAAAAGTCCT---GATGCTGAAGAAAAGTTTaaaaaaaTTAGCAATGCACAT 370766 |||||||| || | || || || ||||| |||||| || | | |||| || Sbjct 2003294 GATAGAAATCCTGGTAATAAGGAAGCAGAGGAAAAATTTAAAGAAGTAACAGCTGCATAT 2003353 Query 370767 GGTATTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 | |||| || ||| ||||||| | | | ||||||| | | |||| Sbjct 2003354 GAAGTTCTATCCGATTCTGAAAAAAGAGCAGGTTATGATCGTTATGGT 2003401 Score = 89.7 bits (98), Expect = 4e-12 Identities = 121/168 (72%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 370650 AATGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCT 370709 ||||| | || |||||| || ||||||||||| |||||| ||||| | |||||||| ||| Sbjct 2667335 AATGCTAGTGTTGATGAGATAAAAAAAGCATATAAAAAATTAGCATTAAAATATCACCCT 2667394 Query 370710 GATAGAAACAAAAGTCCT---GATGCTGAAGAAAAGTTTaaaaaaaTTAGCAATGCACAT 370766 |||||||| || | || || || ||||| |||||| || | | |||| || Sbjct 2667395 GATAGAAATCCTGGTAATAAGGAAGCAGAGGAAAAATTTAAAGAAGTAACAGCTGCATAT 2667454 Query 370767 GGTATTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 | |||| || ||| ||||||| | | | ||||||| | | |||| Sbjct 2667455 GAAGTTCTATCCGATTCTGAAAAAAGAGCAGGTTATGATCGTTATGGT 2667502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029185154067040