Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armadillidium_20vulgare_20[genbank_20GCA_5F001887335.1_202016-11-29] 2,096 sequences; 15,703,284 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 196 1e-44 seq1392 154 4e-32 >seq1 Length=2798100 Score = 196 bits (216), Expect = 1e-44 Identities = 252/348 (72%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 349577 GCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTT 349636 || ||||| ||| | || | ||||| |||||||| || || || ||||| || || Sbjct 659482 GCAGAAGCTTATCTTGGAGGGGAAGTAAAAGATGCTGTGATAACAGTGCCAGCATACTTC 659423 Query 349637 AATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTA 349696 |||||| | || ||| |||||||||||||| || | ||||| || |||||||| || Sbjct 659422 AATGATTCTCAACGTCAAGCAACAAAAGATGCAGGAAAAATTGCTGGATTAAATGTGCTC 659363 Query 349697 AGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGAC 349756 || || ||||| ||||| |||||||||||| |||| ||||| |||||||||| | Sbjct 659362 AGGATAATTAACGAACCAACTGCTGCAGCACTTGCTTATGGTCTTGATAAAA------AG 659309 Query 349757 CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTA 349816 || | | | | || | | | |||| | ||||||||||| ||||| || ||| |||| Sbjct 659308 CACGGACACACAATAGTAGTGTATGATCTTGGTGGTGGTACATTTGACGTTTCAATACTT 659249 Query 349817 ACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGA 349876 | | | || ||| |||| ||||| ||||| || |||||||| ||||| ||||| Sbjct 659248 GAAATAGGTGATGGAGTTTTCGAAGTGAAAGCGACAAACGGTGATACTCATCTGGGTGGT 659189 Query 349877 GAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 ||||||||||||||| | || ||||| || | ||||||||| Sbjct 659188 GAAGATTTTGATAATGCAGTAGTGAATCATTTACTTGATGAATTTAAG 659141 Score = 196 bits (216), Expect = 1e-44 Identities = 252/348 (72%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 349577 GCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTT 349636 || ||||| ||| | || | ||||| |||||||| || || || ||||| || || Sbjct 1782704 GCAGAAGCTTATCTTGGAGGGGAAGTAAAAGATGCTGTGATAACAGTGCCAGCATACTTC 1782763 Query 349637 AATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTA 349696 |||||| | || ||| |||||||||||||| || | ||||| || |||||||| || Sbjct 1782764 AATGATTCTCAACGTCAAGCAACAAAAGATGCAGGAAAAATTGCTGGATTAAATGTGCTC 1782823 Query 349697 AGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGAC 349756 || || ||||| ||||| |||||||||||| |||| ||||| |||||||||| | Sbjct 1782824 AGGATAATTAACGAACCAACTGCTGCAGCACTTGCTTATGGTCTTGATAAAA------AG 1782877 Query 349757 CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTA 349816 || | | | | || | | | |||| | ||||||||||| ||||| || ||| |||| Sbjct 1782878 CACGGACACACAATAGTAGTGTATGATCTTGGTGGTGGTACATTTGACGTTTCAATACTT 1782937 Query 349817 ACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGA 349876 | | | || ||| |||| ||||| ||||| || |||||||| ||||| ||||| Sbjct 1782938 GAAATAGGTGATGGAGTTTTCGAAGTGAAAGCGACAAACGGTGATACTCATCTGGGTGGT 1782997 Query 349877 GAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 ||||||||||||||| | || ||||| || | ||||||||| Sbjct 1782998 GAAGATTTTGATAATGCAGTAGTGAATCATTTACTTGATGAATTTAAG 1783045 Score = 113 bits (124), Expect = 1e-19 Identities = 309/470 (66%), Gaps = 19/470 (4%) Strand=Plus/Minus Query 350173 TCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTT 350232 ||| |||| ||||| ||| | |||||||| || ||||| |||||||| | || Sbjct 658880 TCAAATTGGCGAAGTGGTTCTCGTTGGTGGCATGACTCGTATGCCAAAAGTCATAGAGAA 658821 Query 350233 ACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGT 350292 | | || || ||| |||||||| || |||| | | ||||| ||||||| ||| Sbjct 658820 AGTTAAAGAATTCTTT---GGCAAAGATCCACATAGAGGAGTCAATCCTGATGAAGTTGT 658764 Query 350293 TGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGA 350352 ||| ||| ||||| | |||||| || | || | | | | ||| | Sbjct 658763 AGCAATTGGAGCTGCAATACAGGCAGGGATCAT-TCAAG------GTGATGTAAGA---- 658715 Query 350353 TGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGT 350412 ||| | |||||||| || || ||||||||||| ||||| | |||||| || | ||| Sbjct 658714 -GATGTGTTACTACTTGACGTGACTCCACTTTCTCTTGGTATTGAAACTCTAGGAGGAGT 658656 Query 350413 AATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTC 350472 | | ||| |||||| | |||| |||| | || || ||||| ||||| ||||| Sbjct 658655 ATTCACTCCACTTATTGAACGTAATACTACTATTCCCACTAAAAAATCCCAGGTGTTTTC 658596 Query 350473 TACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACG--TGCT 350530 || | ||||||||| |||| || |||||| | || | | |||||| | | Sbjct 658595 AACTGCAGAAGATAATCAAACAGCTGTTACAATTAAGGTGCATCAGGGTGAAAGAAAATT 658536 Query 350531 CGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCT 350590 ||| | ||||| || |||||| |||||| || | ||| || || || Sbjct 658535 GGCAGT--TGATAACAAGTTACTTGGTCAATTTAGTTTAGAAGGAATACCTCCTGCTCCG 658478 Query 350591 AGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 | |||||||| || |||||||| | || ||||| ||| ||||||| || Sbjct 658477 CGTGGAGTTCCACAAATTGAAGTGACATTTGATATAGATGCAAATGGAAT 658428 Score = 113 bits (124), Expect = 1e-19 Identities = 309/470 (66%), Gaps = 19/470 (4%) Strand=Plus/Plus Query 350173 TCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTT 350232 ||| |||| ||||| ||| | |||||||| || ||||| |||||||| | || Sbjct 1783306 TCAAATTGGCGAAGTGGTTCTCGTTGGTGGCATGACTCGTATGCCAAAAGTCATAGAGAA 1783365 Query 350233 ACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGT 350292 | | || || ||| |||||||| || |||| | | ||||| ||||||| ||| Sbjct 1783366 AGTTAAAGAATTCTTT---GGCAAAGATCCACATAGAGGAGTCAATCCTGATGAAGTTGT 1783422 Query 350293 TGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGA 350352 ||| ||| ||||| | |||||| || | || | | | | ||| | Sbjct 1783423 AGCAATTGGAGCTGCAATACAGGCAGGGATCAT-TCAAG------GTGATGTAAGA---- 1783471 Query 350353 TGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGT 350412 ||| | |||||||| || || ||||||||||| ||||| | |||||| || | ||| Sbjct 1783472 -GATGTGTTACTACTTGACGTGACTCCACTTTCTCTTGGTATTGAAACTCTAGGAGGAGT 1783530 Query 350413 AATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTC 350472 | | ||| |||||| | |||| |||| | || || ||||| ||||| ||||| Sbjct 1783531 ATTCACTCCACTTATTGAACGTAATACTACTATTCCCACTAAAAAATCCCAGGTGTTTTC 1783590 Query 350473 TACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACG--TGCT 350530 || | ||||||||| |||| || |||||| | || | | |||||| | | Sbjct 1783591 AACTGCAGAAGATAATCAAACAGCTGTTACAATTAAGGTGCATCAGGGTGAAAGAAAATT 1783650 Query 350531 CGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCT 350590 ||| | ||||| || |||||| |||||| || | ||| || || || Sbjct 1783651 GGCAGT--TGATAACAAGTTACTTGGTCAATTTAGTTTAGAAGGAATACCTCCTGCTCCG 1783708 Query 350591 AGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 | |||||||| || |||||||| | || ||||| ||| ||||||| || Sbjct 1783709 CGTGGAGTTCCACAAATTGAAGTGACATTTGATATAGATGCAAATGGAAT 1783758 Score = 87.8 bits (96), Expect = 5e-12 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 183638 TTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACC 183697 ||||||| ||||||| || ||||| | | || | ||||||||||||||||||| Sbjct 659137 TTTTCTT--AAATTCATCAAGTAAATGATTCACTACTGCATTATCAAAATCTTCACCACC 659194 Query 183698 TAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAA-- 183755 | ||| ||||| || || ||||| ||||| || | ||| || | ||||| || Sbjct 659195 CAGATGAGTATCACCGTTTGTCGCTTTCACTTCGAAAACTCCATCACC--TATTTCAAGT 659252 Query 183756 ATTGATACATCAAATGTACCACCACCCAAATCA 183788 ||||| || ||||||||||||||||| | |||| Sbjct 659253 ATTGAAACGTCAAATGTACCACCACCAAGATCA 659285 Score = 87.8 bits (96), Expect = 5e-12 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 183638 TTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACC 183697 ||||||| ||||||| || ||||| | | || | ||||||||||||||||||| Sbjct 1783049 TTTTCTT--AAATTCATCAAGTAAATGATTCACTACTGCATTATCAAAATCTTCACCACC 1782992 Query 183698 TAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAA-- 183755 | ||| ||||| || || ||||| ||||| || | ||| || | ||||| || Sbjct 1782991 CAGATGAGTATCACCGTTTGTCGCTTTCACTTCGAAAACTCCATCACC--TATTTCAAGT 1782934 Query 183756 ATTGATACATCAAATGTACCACCACCCAAATCA 183788 ||||| || ||||||||||||||||| | |||| Sbjct 1782933 ATTGAAACGTCAAATGTACCACCACCAAGATCA 1782901 >seq1392 Length=6431 Score = 154 bits (170), Expect = 4e-32 Identities = 267/387 (69%), Gaps = 6/387 (2%) Strand=Plus/Minus Query 378124 AATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATA 378183 || ||||| || |||||| | |||| || || | | ||||||||||||| | Sbjct 879 AACCCATCTTCACCATATCTAAGCTGAATAACTTGACTAACACTGTTTCTTACAGTTCCA 820 Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 ||||| ||||||| | ||| | ||||| || | || || || ||||||||| Sbjct 819 TCATAGTTAACCATAACGCTTTCCATAGCTTTTATCAAACGACGCTGGATGTAACCAGTT 760 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | |||||| || ||||||||||| ||||| ||||||||||||| |||||||| | Sbjct 759 TCCGCAGTTTTTACAGCAGTATCAATCAAACCTTCACGACCACCCATGGCATGGAAATAA 700 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 ||||| | ||| || ||||| | | ||||| |||| | ||| ||||| | | || Sbjct 699 AATTCGGAAGGTGTCAGTCCTGCTAAGTATGAATTCTCTACAAAGCCTCTAGACTCAGGA 640 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423 | ||||| ||| | ||||||| ||||| | || ||| ||| |||| || ||| Sbjct 639 CCGTAATCATCTTTAATGAAATGAGGCAATGTTCTTTTTCGAAATCCAAATGGTATACGT 580 Query 378424 TTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCAT---TTGAGCAATATTTAAATCA 378480 ||||| || |||||||| ||||| | || || | || ||||| ||||| | || Sbjct 579 TTTCCTTCTACATTCTGCTGACCCA---CACAAGCGATAACTTGAGAGATATTAATATTT 523 Query 378481 CTACCTTTAGACCCAGCATTAACCATA 378507 || || ||||||||| |||||| Sbjct 522 GATCCCTTGGACCCAGCAACTACCATA 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515213707843088