Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armadillidium_20vulgare_20[genbank_20GCA_5F001887335.1_202016-11-29] 2,096 sequences; 15,703,284 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq3 129 2e-25 seq1 129 2e-25 seq5 80.6 9e-11 >seq3 Length=44965 Score = 129 bits (142), Expect = 2e-25 Identities = 282/424 (67%), Gaps = 40/424 (9%) Strand=Plus/Minus Query 38816 GTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTG---TTTTATGG 38872 || ||||||||||| ||||| | ||| ||| |||| ||| || | ||| Sbjct 16672 GTGTAAATTTTCTTTCTAAA--------GATAATATT---GTAACATTCATCTTCTGTGG 16624 Query 38873 AACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATG 38932 |||| ||| || || ||||| ||||| ||| || ||| | | || || || Sbjct 16623 AACCTTTCACATATGCCATTAGTCTGTGGAG--------TTGGTTCTAGAGTGATCAATA 16572 Query 38933 TCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTT 38992 | | ||| | ||||| |||| || | ||||| || ||||||||||| || | Sbjct 16571 TTTTCTATTCCCAAATATAGCTGGTACGCATGATTCCCTGGTTTGCCACAATACTCCGTA 16512 Query 38993 CCTCGGTCAGTTAATATGCGTAACA-TCGGTAAACCTTGGCTTTCAAAGTATGGTAACAC 39051 |||| || ||||| ||||||| || || || | ||||| |||||| || Sbjct 16511 CCTCTATCGGTTAAAATGCGTAGCAATCTGTTCA---------TCAAAAAATGGTATAAC 16461 Query 39052 TTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA 39111 | ||||||| || | ||| ||||| |||| || || ||| |||||||| || || || Sbjct 16460 TCTATCATTGAGAAGATCTGCAGCTGTGATGGCAGTTTTCTCCGTATAAAGCTTAGCGAA 16401 Query 39112 CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAG 39171 |||||| || ||| || ||||| || |||||||||||||| || || | ||||| Sbjct 16400 GGCCACTCTAGAGTAGGTGTCAATGAAAGTTTGTTGATAAATTCGTCCAATACCTTT--- 16344 Query 39172 GTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTC 39231 | ||||| | |||||||| || | || ||||||||| || |||||||| Sbjct 16343 -----CTACATAATATGTATCTTGACTACCTAAGTATCCAGGGTGTTGTGTCTCAATTTC 16289 Query 39232 ACCA 39235 ||| Sbjct 16288 GCCA 16285 >seq1 Length=2798100 Score = 129 bits (142), Expect = 2e-25 Identities = 282/424 (67%), Gaps = 40/424 (9%) Strand=Plus/Minus Query 38816 GTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTG---TTTTATGG 38872 || ||||||||||| ||||| | ||| ||| |||| ||| || | ||| Sbjct 111993 GTGTAAATTTTCTTTCTAAA--------GATAATATT---GTAACATTCATCTTCTGTGG 111945 Query 38873 AACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATG 38932 |||| ||| || || ||||| ||||| ||| || ||| | | || || || Sbjct 111944 AACCTTTCACATATGCCATTAGTCTGTGGAG--------TTGGTTCTAGAGTGATCAATA 111893 Query 38933 TCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTT 38992 | | ||| | ||||| |||| || | ||||| || ||||||||||| || | Sbjct 111892 TTTTCTATTCCCAAATATAGCTGGTACGCATGATTCCCTGGTTTGCCACAATACTCCGTA 111833 Query 38993 CCTCGGTCAGTTAATATGCGTAACA-TCGGTAAACCTTGGCTTTCAAAGTATGGTAACAC 39051 |||| || ||||| ||||||| || || || | ||||| |||||| || Sbjct 111832 CCTCTATCGGTTAAAATGCGTAGCAATCTGTTCA---------TCAAAAAATGGTATAAC 111782 Query 39052 TTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA 39111 | ||||||| || | ||| ||||| |||| || || ||| |||||||| || || || Sbjct 111781 TCTATCATTGAGAAGATCTGCAGCTGTGATGGCAGTTTTCTCCGTATAAAGCTTAGCGAA 111722 Query 39112 CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAG 39171 |||||| || ||| || ||||| || |||||||||||||| || || | ||||| Sbjct 111721 GGCCACTCTAGAGTAGGTGTCAATGAAAGTTTGTTGATAAATTCGTCCAATACCTTT--- 111665 Query 39172 GTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTC 39231 | ||||| | |||||||| || | || ||||||||| || |||||||| Sbjct 111664 -----CTACATAATATGTATCTTGACTACCTAAGTATCCAGGGTGTTGTGTCTCAATTTC 111610 Query 39232 ACCA 39235 ||| Sbjct 111609 GCCA 111606 Score = 129 bits (142), Expect = 2e-25 Identities = 282/424 (67%), Gaps = 40/424 (9%) Strand=Plus/Plus Query 38816 GTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTG---TTTTATGG 38872 || ||||||||||| ||||| | ||| ||| |||| ||| || | ||| Sbjct 1319195 GTGTAAATTTTCTTTCTAAA--------GATAATATT---GTAACATTCATCTTCTGTGG 1319243 Query 38873 AACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATG 38932 |||| ||| || || ||||| ||||| ||| || ||| | | || || || Sbjct 1319244 AACCTTTCACATATGCCATTAGTCTGTGGAG--------TTGGTTCTAGAGTGATCAATA 1319295 Query 38933 TCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTT 38992 | | ||| | ||||| |||| || | ||||| || ||||||||||| || | Sbjct 1319296 TTTTCTATTCCCAAATATAGCTGGTACGCATGATTCCCTGGTTTGCCACAATACTCCGTA 1319355 Query 38993 CCTCGGTCAGTTAATATGCGTAACA-TCGGTAAACCTTGGCTTTCAAAGTATGGTAACAC 39051 |||| || ||||| ||||||| || || || | ||||| |||||| || Sbjct 1319356 CCTCTATCGGTTAAAATGCGTAGCAATCTGTTCA---------TCAAAAAATGGTATAAC 1319406 Query 39052 TTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA 39111 | ||||||| || | ||| ||||| |||| || || ||| |||||||| || || || Sbjct 1319407 TCTATCATTGAGAAGATCTGCAGCTGTGATGGCAGTTTTCTCCGTATAAAGCTTAGCGAA 1319466 Query 39112 CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAG 39171 |||||| || ||| || ||||| || |||||||||||||| || || | ||||| Sbjct 1319467 GGCCACTCTAGAGTAGGTGTCAATGAAAGTTTGTTGATAAATTCGTCCAATACCTTT--- 1319523 Query 39172 GTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTC 39231 | ||||| | |||||||| || | || ||||||||| || |||||||| Sbjct 1319524 -----CTACATAATATGTATCTTGACTACCTAAGTATCCAGGGTGTTGTGTCTCAATTTC 1319578 Query 39232 ACCA 39235 ||| Sbjct 1319579 GCCA 1319582 Score = 129 bits (142), Expect = 2e-25 Identities = 282/424 (67%), Gaps = 40/424 (9%) Strand=Plus/Minus Query 38816 GTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTG---TTTTATGG 38872 || ||||||||||| ||||| | ||| ||| |||| ||| || | ||| Sbjct 1351178 GTGTAAATTTTCTTTCTAAA--------GATAATATT---GTAACATTCATCTTCTGTGG 1351130 Query 38873 AACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATG 38932 |||| ||| || || ||||| ||||| ||| || ||| | | || || || Sbjct 1351129 AACCTTTCACATATGCCATTAGTCTGTGGAG--------TTGGTTCTAGAGTGATCAATA 1351078 Query 38933 TCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTT 38992 | | ||| | ||||| |||| || | ||||| || ||||||||||| || | Sbjct 1351077 TTTTCTATTCCCAAATATAGCTGGTACGCATGATTCCCTGGTTTGCCACAATACTCCGTA 1351018 Query 38993 CCTCGGTCAGTTAATATGCGTAACA-TCGGTAAACCTTGGCTTTCAAAGTATGGTAACAC 39051 |||| || ||||| ||||||| || || || | ||||| |||||| || Sbjct 1351017 CCTCTATCGGTTAAAATGCGTAGCAATCTGTTCA---------TCAAAAAATGGTATAAC 1350967 Query 39052 TTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA 39111 | ||||||| || | ||| ||||| |||| || || ||| |||||||| || || || Sbjct 1350966 TCTATCATTGAGAAGATCTGCAGCTGTGATGGCAGTTTTCTCCGTATAAAGCTTAGCGAA 1350907 Query 39112 CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAG 39171 |||||| || ||| || ||||| || |||||||||||||| || || | ||||| Sbjct 1350906 GGCCACTCTAGAGTAGGTGTCAATGAAAGTTTGTTGATAAATTCGTCCAATACCTTT--- 1350850 Query 39172 GTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTC 39231 | ||||| | |||||||| || | || ||||||||| || |||||||| Sbjct 1350849 -----CTACATAATATGTATCTTGACTACCTAAGTATCCAGGGTGTTGTGTCTCAATTTC 1350795 Query 39232 ACCA 39235 ||| Sbjct 1350794 GCCA 1350791 >seq5 Length=67565 Score = 80.6 bits (88), Expect = 9e-11 Identities = 119/169 (70%), Gaps = 10/169 (6%) Strand=Plus/Minus Query 38975 TTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAAC-ATCGGTAAACCTTGGCT 39033 ||||||||||| || | |||| || ||||| ||||||| | ||| || | Sbjct 50066 TTGCCACAATACTCCGTACCTCTATCGGTTAAAATGCGTAGCAATCTGTTCA-------- 50015 Query 39034 TTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCAT 39093 ||||| |||||| ||| ||||||| || | ||| ||||| |||| || || ||| Sbjct 50014 -TCAAAAAATGGTATAACTCTATCATTGAGAAGATCTGCAGCTGTGATGGCAGTTTTCTC 49956 Query 39094 TGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTT 39142 |||||||| || || || |||||| || ||| || ||||| || ||| Sbjct 49955 CGTATAAAGCTTAGCGAAGGCCACTCTAGAGTAGGTGTCAATGAAAGTT 49907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160124014414080