Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Armadillidium_20vulgare_20[genbank_20GCA_5F001887335.1_202016-11-29] 2,096 sequences; 15,703,284 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 116 9e-21 seq1 116 9e-21 seq103 96.9 8e-15 seq1261 84.2 5e-11 >seq4 Length=64497 Score = 116 bits (128), Expect = 9e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| || || ||||| ||| ||||||||||||| |||||||||| Sbjct 28888 ATGTCAAGGAGTGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 28829 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | |||||| || ||||||||||||| |||||| |||||| | |||| ||| Sbjct 28828 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTAGTCCCCAGGCGGA 28769 Query 7845 ATATTT-ACGCGTTAGCT-TAAT 7865 || ||| ||||||||||| |||| Sbjct 28768 ATGTTTAACGCGTTAGCTGTAAT 28746 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 28215 TGAGAGGATGATCAGCCACACTGGAACTGAGATACGGTCCA-GACTCCTACGGGAGGCAG 28273 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 28274 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 28313 >seq1 Length=2798100 Score = 116 bits (128), Expect = 9e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| || || ||||| ||| ||||||||||||| |||||||||| Sbjct 1539494 ATGTCAAGGAGTGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 1539553 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | |||||| || ||||||||||||| |||||| |||||| | |||| ||| Sbjct 1539554 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTAGTCCCCAGGCGGA 1539613 Query 7845 ATATTT-ACGCGTTAGCT-TAAT 7865 || ||| ||||||||||| |||| Sbjct 1539614 ATGTTTAACGCGTTAGCTGTAAT 1539636 Score = 116 bits (128), Expect = 9e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| || || ||||| ||| ||||||||||||| |||||||||| Sbjct 2431238 ATGTCAAGGAGTGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 2431179 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | |||||| || ||||||||||||| |||||| |||||| | |||| ||| Sbjct 2431178 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTAGTCCCCAGGCGGA 2431119 Query 7845 ATATTT-ACGCGTTAGCT-TAAT 7865 || ||| ||||||||||| |||| Sbjct 2431118 ATGTTTAACGCGTTAGCTGTAAT 2431096 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 372598 TAAGCTGCTATAAG-CAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTAC 372656 ||| ||||| | || ||| || |||||| ||| ||||| | ||||||||||||||| Sbjct 1124081 TAACCTGCTTTTAGGCAACTATGAGTAGGTGGCACAAAATAGGGAGTAGCGACTGTTTAC 1124140 Query 372657 TAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705 |||||||||||||||| || || ||||| || |||||||||||||| Sbjct 1124141 TAAAAACACAGGACTCTGCAAACATGTAAGTGGAAGTATAGGGTCTGAC 1124189 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 372598 TAAGCTGCTATAAG-CAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTAC 372656 ||| ||||| | || ||| || |||||| ||| ||||| | ||||||||||||||| Sbjct 2120581 TAACCTGCTTTTAGGCAACTATGAGTAGGTGGCACAAAATAGGGAGTAGCGACTGTTTAC 2120522 Query 372657 TAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705 |||||||||||||||| || || ||||| || |||||||||||||| Sbjct 2120521 TAAAAACACAGGACTCTGCAAACATGTAAGTGGAAGTATAGGGTCTGAC 2120473 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 372598 TAAGCTGCTATAAG-CAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTAC 372656 ||| ||||| | || ||| || |||||| ||| ||||| | ||||||||||||||| Sbjct 2784682 TAACCTGCTTTTAGGCAACTATGAGTAGGTGGCACAAAATAGGGAGTAGCGACTGTTTAC 2784623 Query 372657 TAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705 |||||||||||||||| || || ||||| || |||||||||||||| Sbjct 2784622 TAAAAACACAGGACTCTGCAAACATGTAAGTGGAAGTATAGGGTCTGAC 2784574 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 1540167 TGAGAGGATGATCAGCCACACTGGAACTGAGATACGGTCCA-GACTCCTACGGGAGGCAG 1540109 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 1540108 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 1540069 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 2430565 TGAGAGGATGATCAGCCACACTGGAACTGAGATACGGTCCA-GACTCCTACGGGAGGCAG 2430623 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 2430624 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 2430663 >seq103 Length=25330 Score = 96.9 bits (106), Expect = 8e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || || || ||| | || || ||||| ||||| || ||||| ||| | | || || || Sbjct 18342 TATAATGTAATTGTAACTGCTCATGCTTTTGTGATAATTTTTTTTATAATAATACCTATT 18401 Query 7618 ATGATAGGCGGT-TTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGC 7676 || || || || || ||||||||||| |||| |||| | || || | |||||| || Sbjct 18402 ATAATCGGGGGGGTTTGGAAATTGATTAATTCCGCTAATACTAGGGGCCCTTGATATAGC 18461 Query 7677 TTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 |||||| | | || |||||||| |||||||| ||||| ||||| Sbjct 18462 TTTTCCCTGTATAAATAATATAAGATTTTGATTGCTACCTCCTTC 18506 >seq1261 Length=4754 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || ||||| || ||||| ||||| || || ||||| Sbjct 950 GAAGATTTGTCCATCAGTAATTGAAATTACATTAGTTGGGATGTAAGCTGATACGTCACC 891 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || || ||||| | |||||| | ||||| || || || || ||| Sbjct 890 AGCCTGAGTTTCAATAACAGGAAGAGCTGTAAGAGAACCGCCTCCA 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192499174574624