Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq142 93.3 4e-14 seq168 82.4 8e-11 >seq142 Length=137952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || ||||| ||||| ||| |||||| ||||| || | ||| ||||||||||| || || Sbjct 57105 TAGGTATCAATGAGAAGGGAGTACATCTCGGAATGGACGTTTTCCATGGCTATTTGGAAA 57046 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGAT 17354 || ||||| ||||| ||||||| || ||||||| || || ||||| || | |||| Sbjct 57045 CCATAAAAACATCGTGCTTCCGTTACAGTAACTTCCTGAC-TA-AATCGCTCGACGAGAT 56988 Query 17355 TTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGC 17401 | ||||| || || || || || || || || ||||| | |||| Sbjct 56987 TCTCGTTGACAATTCCATCAGATGCTGCAAAGAAGGCCAAAACATGC 56941 >seq168 Length=1844999 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || |||||||| | |||||| | ||||| | |||||||| |||| || || | Sbjct 1481621 CCAACGTATCCACTTGGATCCCTGCCATCCATGCTATATTTATCATTTAGATATATC--G 1481564 Query 119921 ACGCTTAACGCACTT--TCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 || || | | ||| ||||| || | |||| || || || ||||| ||||| |||| Sbjct 1481563 ACCATTCAAGTGCTTGTTCAGGTGTACTGGTCCACTCTAGAATCTTTTTTGCCCAATACA 1481504 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 | | || | ||||||||||| ||||| | |||| |||| |||||| | ||||||| Sbjct 1481503 TTCTCAAAAAACCATGCATTTTTCCTTCCTGTACCAACTGAATTTGTGCTGAATTCCATA 1481444 Query 120039 AGGGATCGTGTGT 120051 || ||| || || Sbjct 1481443 AGTCATCATGAGT 1481431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542223014960