Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 >seq2 Length=4278185 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || | ||| || ||||| ||||| ||||| ||||| || || || | || || | Sbjct 2655192 CTTTGTACTGTGCGCCAAAATGTCTCCATTGAAAGCCATAGACTGGACCTAAGTCACCCT 2655251 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||| ||| ||||||| |||||| ||||||||||||| | ||| || | ||| | Sbjct 2655252 CGTCTCGATCAATAAAACCACATTTATCCAAAAATGATCTAGTACTATTGGCGTTCCAGA 2655311 Query 102153 TGTGCACGCCAGCTGCT-GATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAAC 102211 | | ||| || ||||| | || ||| || || || |||||| |||| ||||||| Sbjct 2655312 TATTCACACC-TCTGCTGGCTAATTCTCTGGCATCTGTCGATCCTTTGATGAACCACAGA 2655370 Query 102212 AGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 |||||||| |||||||||| |||||| || |||| ||||| || | ||||| Sbjct 2655371 AGTTCTTCGACAACACCTCGCCAAAACACAGTCTTTGTAGTCAATAACGGAAA 2655423 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||||| || | ||| | || | ||| | ||| || || ||||||||||||||||| Sbjct 2654801 GTGACATGTGCCAACATATACGTGAGAAGGGCATAACTGGCGATGTTAAATGGCACTCCA 2654860 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | ||||| || || || |||||||||| ||| || | || |||| | ||||| Sbjct 2654861 AGACCCATGTCTGCACTTCGTTGATACAGTAAACAAGATAACTCTCCACTAGCTACATAG 2654920 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAA 101932 ||||| || || || || || | |||| |||||||| || | |||||| Sbjct 2654921 AATTGCACCAAGCAGTGGCAGGGTGGTAGAGCCATCTTAGGAATATCAACAGGATTCCAG 2654980 Query 101933 GCACACAT 101940 |||||||| Sbjct 2654981 GCACACAT 2654988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248901765022