Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 seq142 91.5 2e-13 >seq2 Length=4278185 Score = 159 bits (176), Expect = 4e-34 Identities = 169/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 54442 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGA 54501 ||| || |||||||| ||||| ||||||| || | ||||||||| ||||| |||||| Sbjct 517526 GGTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTT 517585 Query 54502 GTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 ||| ||||| || | |||||| || |||||||| |||||||| | ||||| |||||| Sbjct 517586 GTCGATATC--ATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTT 517643 Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 ||||| | ||| || |||||||||||||| | |||| ||||| || |||||| Sbjct 517644 TCAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAA 517703 Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 ||||| || |||||||| || |||||||| | ||||| Sbjct 517704 TAGTTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTT 517744 Score = 147 bits (162), Expect = 3e-30 Identities = 243/345 (70%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 53549 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 53608 ||||||||||||||||||||| |||| || |||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 53609 ATATCTATAATTTTATTGAGGTT-TCTGACAATTACTTTGACCACATCCTTCAG-TTTGA 53666 ||||| || ||||| || | ||| | || ||| | |||| ||| || || || ||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATG-CAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 53667 GAAAATCAAATTGTCCATCT---ATTACAAACATGTTCAATGCAATAGATGCCAGATTAC 53723 |||| | | | | |||| | ||||||||||| | ||||| ||||| ||||| | Sbjct 516459 GAAATTGTAGGTCT-TATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGC 516517 Query 53724 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 53783 |||| || | |||| | | ||||| || || || || ||||| || || || | Sbjct 516518 AAACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATT 516577 Query 53784 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 53843 | || ||||| | ||| || ||||| || ||||| ||| ||||| || ||| Sbjct 516578 TAATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGATCTTTATACAGCATGT 516637 Query 53844 ATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGA 53888 | || || || || |||| ||| || | |||||| ||| ||||| Sbjct 516638 AAGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 >seq142 Length=137952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || || | |||||||||||| || |||||||| || || ||||| || || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATT 24740 || ||||| | |||| ||||| |||||||| || | ||||||||| | || | | Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTTTCTCTCAGCAAT 56674 Query 24741 GGTTC 24745 ||||| Sbjct 56673 GGTTC 56669 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 |||||||| ||| | ||| ||| || || || || ||||| || || || || || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||||| ||||| || || || |||||||||||||| |||||||| Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGGCC 57331 Query 24279 ATAAGTCTTTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCC 24335 | | || |||||| || || || ||||| ||||| ||| ||||| | || Sbjct 57330 ACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAGCT 57271 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 || ||| |||||||| | |||| || ||||| || | | ||| Sbjct 57270 TTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAAAAAGT 57225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717725966560