Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq223 109 5e-19 >seq223 Length=3708094 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | || ||||||||||||||||| ||||| ||| || || | Sbjct 238930 AATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTC 238989 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || | || |||||| || |||||||| | || |||||| Sbjct 238990 TGACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCA 239049 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | ||||||||||| |||||||| ||||| ||| || || | || ||||| Sbjct 239050 GCAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAA 239109 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||| || || ||| |||| | ||| | || ||||| Sbjct 239110 TATTCAGAAGGAATCCACGCTGCACTTGGTTCTTCGACTTCGTGGAGG 239157 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | || || ||||| || || || |||||| ||| ||| || | Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || |||||||| | || ||||||| Sbjct 239219 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAA 239278 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| || |||||| |||| ||| | || || |||| ||||| Sbjct 239279 CAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAAC 239338 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||||||||| ||| |||| | || |||| || || Sbjct 239339 ATCCAAAAGGAATCTACTCTCCACTTGGTTCTTCGTCTACGTGGTGG 239385 Score = 102 bits (112), Expect = 7e-17 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| | || |||||||| | ||| ||||||||||||| | |||||||| Sbjct 239922 AAGCAAAAA-TCCAGGACAAAGAAGGAATTCCCCCAGATCAACAAAGATTGATCTTTGCC 239980 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || ||||| |||||||| || || |||| ||||||||||| |||||||||||| Sbjct 239981 GGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAATATTCAAAAGGAATCTACT 240040 Query 29160 CTTCACATGGT 29170 |||||| |||| Sbjct 240041 CTTCACTTGGT 240051 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || ||||||| | || || ||||| || ||| ||| || || | Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | ||||| ||| ||| ||||||||||| | ||| ||| || Sbjct 239446 CGACACCATTGAAAACGTTAAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACCA 239505 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | || || || |||||||| |||||||| || || | || ||||| Sbjct 239506 ACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 239565 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 ||| |||||||||||||||||||| Sbjct 239566 TATCCAGAAGGAATCTACTCTTCA 239589 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| || || || || ||||| ||| ||| ||| | | Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| ||||||||||| | ||| ||| ||| Sbjct 240131 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 240190 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| ||||| ||||| |||||||| || || |||| || || Sbjct 240191 CAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 240250 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| || | || |||| |||| | || ||||| Sbjct 240251 ATTCAGAAGGAATCCACCTTGCATTTGGTTCTACGTCTCCGGGGAGG 240297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428333274979910